Browse Element(s) Details


OsAffx.3684.1.S1_at

Description tigr:9631.m06292
TID=OsAffx.3684.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6357010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein
LOC_Os03g63620Os.56016.1.S1_at11/113+35861701..35862781Tetraspanin family protein, expressed
LOC_Os03g63630NANA3+35867160..35873312transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3684.1.S1_at--876--6331Chr03:35843374..35843398 (25 bp)
GATGCTTTACTTCGACACAGCTGAC
LOC_Os03g63570
OsAffx.3684.1.S1_at--1043--2251Chr03:35843429..35843453 (25 bp)
AAATCAGTCAGGGACGTTCACTACA
LOC_Os03g63570
OsAffx.3684.1.S1_at--487--7631Chr03:35843439..35843463 (25 bp)
GGGACGTTCACTACAAAATCTCTAT
LOC_Os03g63570
OsAffx.3684.1.S1_at--286--9851Chr03:35843463..35843487 (25 bp)
TACAGGGCTATTATCTTTGGAGGGA
LOC_Os03g63570
OsAffx.3684.1.S1_at--1122--6291Chr03:35843600..35843624 (25 bp)
GATGAATTGGTCAGGCAGCCCGTTT
LOC_Os03g63570
OsAffx.3684.1.S1_at--674--3371NONE
CAGCCCGTTTTGTGCTTGGTCGATA
NONE
OsAffx.3684.1.S1_at--643--5591Chr03:35844230..35844254 (25 bp)
GACAAACTTCTGACCAACGTGACGT
LOC_Os03g63570
OsAffx.3684.1.S1_at--1124--5691Chr03:35844250..35844274 (25 bp)
GACGTTTTTACCTCACAAAGCTATG
LOC_Os03g63570
OsAffx.3684.1.S1_at--997--1071Chr03:35844288..35844312 (25 bp)
AGTGGAAAAACCTGGCGCCGGTGCA
LOC_Os03g63570
OsAffx.3684.1.S1_at--414--5971Chr03:35844471..35844491 (21 bp)
GAGAAGCACTTCTACTTAGACTCTT
LOC_Os03g63570
OsAffx.3684.1.S1_at--582--10031Chr03:35844483..35844507 (25 bp)
TAGACTCTTTCGCTGTTAATTGTGA
LOC_Os03g63570
Target Sequence 
GATGCTTTACTTCGACACAGCTGACTGCAGAAAATGACACTATGTTTTGGAAACTAAATCAGTCAGGGACGTTCACTACA
AAATCTCTATACAGGGCTATTATCTTTGGAGGGATTAAGGGCACCAAGCTCCAGGAGCTTTGGAAAACCCCGGTTCCTTT
GAAGATAAAAGTGTTTATGTGGTTAATGCTGAAGGGGAGGATTCAAGTGGCAAAGCAACTTAAGAAGATGAATTGGTCAG
GCAGCCCGTTTTGTGCTTGGTCGATATGGCTAGTGAGGAATGACTGGGTTTTTAACGACAAACTTCTGACCAACGTGACG
TTTTTACCTCACAAAGCTATGTCGTTTATGATACAGTGGAAAAACCTGGCGCCGGTGCAGCTGAAGGAGGAGTTGGAGAA
GCACTTCTACTTAGACTCTTTCGCTGTTAATTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis