Browse Element(s) Details


OsAffx.3725.1.S1_at

Description tigr:9632.m00408
TID=OsAffx.3725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g049709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04940Os.45212.1.S1_x_at1/114+2366600..2371300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04950OsAffx.3724.1.S1_at11/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950OsAffx.16132.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04950Os.49637.1.S1_at1/114+2377413..2385554Copper amine oxidase, enzyme domain containing protein
LOC_Os04g04959NANA4+2391271..2391731NA
LOC_Os04g04970OsAffx.3725.1.S1_at9/114+2395160..2396190hypothetical protein
LOC_Os04g04980OsAffx.13673.1.S1_x_at11/114+2400936..2402175Pyridoxal-dependent decarboxylase, C-terminal sheet domain containing protein
LOC_Os04g04990NANA4+2403567..2407056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04999NANA4+2410429..2410965hypothetical protein
LOC_Os04g05010Os.8922.1.S1_at10/114+2413872..2416640CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3725.1.S1_at--265--8471NONE
TGGCGCTCACCATAGCACCTTACTT
NONE
OsAffx.3725.1.S1_at--409--8391NONE
GGCGCTCACCATAGCACCTTACTTT
NONE
OsAffx.3725.1.S1_at--51--9151Chr04:2396121..2396145 (25 bp)
TGCGGGTGCTCTAAGCAACCGCAGT
LOC_Os04g04970
OsAffx.3725.1.S1_at--441--3971Chr04:2396123..2396147 (25 bp)
CGGGTGCTCTAAGCAACCGCAGTAT
LOC_Os04g04970
OsAffx.3725.1.S1_at--1010--7771Chr04:2396125..2396149 (25 bp)
GGTGCTCTAAGCAACCGCAGTATCA
LOC_Os04g04970
OsAffx.3725.1.S1_at--422--7311Chr04:2396126..2396150 (25 bp)
GTGCTCTAAGCAACCGCAGTATCAT
LOC_Os04g04970
OsAffx.3725.1.S1_at--245--9091Chr04:2396127..2396151 (25 bp)
TGCTCTAAGCAACCGCAGTATCATC
LOC_Os04g04970
OsAffx.3725.1.S1_at--401--9531Chr04:2396130..2396154 (25 bp)
TCTAAGCAACCGCAGTATCATCCTC
LOC_Os04g04970
OsAffx.3725.1.S1_at--768--9791Chr04:2396132..2396156 (25 bp)
TAAGCAACCGCAGTATCATCCTCGG
LOC_Os04g04970
OsAffx.3725.1.S1_at--693--2731Chr04:2396133..2396157 (25 bp)
AAGCAACCGCAGTATCATCCTCGGA
LOC_Os04g04970
OsAffx.3725.1.S1_at--580--3251Chr04:2396136..2396160 (25 bp)
CAACCGCAGTATCATCCTCGGACAG
LOC_Os04g04970
Target Sequence 
TGGCGCTCACCATAGCACCTTACTTTACCATTGCGGGTGCTCTAAGCAACCGCAGTATCATCCTCGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis