Browse Element(s) Details


OsAffx.3749.1.S1_s_at

Description tigr:9632.m00774
TID=OsAffx.3749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0857011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08540Os.45173.5.S1_x_at4/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540OsAffx.8939.1.S1_x_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540OsAffx.8939.1.S1_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.45173.1.S1_x_at3/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.47999.2.A1_x_at2/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08540Os.47999.3.A1_x_at1/114+4612059..4621296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08550Os.55600.1.S1_at11/114+4625380..4628072oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os04g08560OsAffx.25929.1.S1_at11/114+4631708..4637648Protein phosphatase 2C containing protein, expressed
LOC_Os04g08570OsAffx.3749.1.S1_s_at11/114+4638807..4639709hypothetical protein
LOC_Os04g08580NANA4+4651776..4655328retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g08590OsAffx.25930.1.S1_at11/114+4659208..4659456hypothetical protein
LOC_Os04g08600OsAffx.3750.1.S1_at11/114+4661723..4665812Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3749.1.S1_s_at--176--3511Chr04:4639367..4639391 (25 bp)
CATGGGAGTAGTGGATTTGCCGCTA
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--594--1191Chr04:4639361..4639385 (25 bp)
AGTAGTGGATTTGCCGCTAGAGGCA
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--852--931Chr04:4639341..4639365 (25 bp)
AGGCAATAGGAGGTGCGGATCCATT
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--307--6412Chr04:4639258..4639282 (25 bp)
GATCTACCGCTAGAGGCCATGGGAA
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--1100--871Chr04:4639245..4639269 (25 bp)
AGGCCATGGGAAGGCATCCACCGGC
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--229--1931Chr04:4639177..4639201 (25 bp)
ACGGTGATGTCGGATCTAGCACTAG
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--408--6411Chr04:4639165..4639189 (25 bp)
GATCTAGCACTAGAGGCTATGGGAG
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--1156--7951Chr04:4639100..4639124 (25 bp)
GGATCTACCGCTAGAGGCCATGGGA
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--689--8851Chr04:4639011..4639035 (25 bp)
TGATGCCGGGTCTACCGCTAGAGAC
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--906--7971Chr04:4638974..4638998 (25 bp)
GGATCCACCGGCAACGGTCTTGGGA
LOC_Os04g08570
OsAffx.3749.1.S1_s_at--1095--1911Chr04:4638919..4638943 (25 bp)
ACGGTGATGCCGGATCTACGGCTAG
LOC_Os04g08570
Target Sequence 
CATGGGAGTAGTGGATTTGCCGCTAGAGGCAATAGGAGGTGCGGATCCATTGGCGGCGGCCTTGGGAGGGGCGGATCCGC
GGCCGAGGAGGTCGGGGACGGTGATGCCGGATCTACCGCTAGAGGCCATGGGAAGGCATCCACCGGCGGGGGCCTTGGGA
GAGGCGGATCTGCCACCGAGGAGGTCGGGGACGGTGATGTCGGATCTAGCACTAGAGGCTATGGGAGGGGCCGATCTGCT
GCCGAGGAGGTCGGGCACGGTGATGCCGGATCTACCGCTAGAGGCCATGGGAGGGGCAGATCCATCGACGGCAGCCTCGG
GAGGGGCGGATCCGCCACCGAGGAGGTCAAGGATGGTGATGCCGGGTCTACCGCTAGAGACCATGAGAGGGGCGGATCCA
CCGGCAACGGTCTTGGGAGGGGCAGATCCTCTGCCGAGGAGGTTGGGGACGGTGATGCCGGATCTACGGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3749.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis