Browse Element(s) Details


OsAffx.3759.1.S1_at

Description tigr:9632.m00859
TID=OsAffx.3759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0988011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09840OsAffx.22492.1.S1_x_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09840OsAffx.22492.1.S1_at1/114+5261236..5267391retrotransposon protein, putative, unclassified
LOC_Os04g09860Os.9112.1.S1_at11/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860Os.9112.2.S1_at10/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09860OsAffx.21318.2.S1_at1/114+5270900..5286517Actin, putative, expressed
LOC_Os04g09870NANA4+5287292..5289085hypothetical protein
LOC_Os04g09880OsAffx.3759.1.S1_at11/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.1.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09880OsAffx.23961.2.S1_s_at1/114+5291443..5292815hypothetical protein
LOC_Os04g09900Os.16233.1.S1_a_at11/114+5298069..5306436Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g09910NANA4+5308069..5308886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09920Os.53296.1.S1_at11/114+5312345..5314485Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3759.1.S1_at--1104--4631Chr04:5291756..5291780 (25 bp)
GCGTCTCCAAGCAAAAGTCGTACAA
LOC_Os04g09880
OsAffx.3759.1.S1_at--879--911Chr04:5291851..5291875 (25 bp)
AGGCTTACGATTGGTCCATTCGGGA
LOC_Os04g09880
OsAffx.3759.1.S1_at--632--1871Chr04:5291879..5291903 (25 bp)
ACGAGACTGGGAAGGCCGAGCTCTT
LOC_Os04g09880
OsAffx.3759.1.S1_at--763--8071Chr04:5291945..5291969 (25 bp)
GGAGCGATCCGGAGCATGCAATGCT
LOC_Os04g09880
OsAffx.3759.1.S1_at--95--3011Chr04:5291964..5291988 (25 bp)
AATGCTCTTTGCAAAGGTCGCGGGT
LOC_Os04g09880
OsAffx.3759.1.S1_at--1137--891Chr04:5291993..5292017 (25 bp)
AGGCGACGTGCGACCTTGCGAAGAA
LOC_Os04g09880
OsAffx.3759.1.S1_at--1109--1131Chr04:5292023..5292047 (25 bp)
AGTCTTTACTCCAGCGTTCCAATAA
LOC_Os04g09880
OsAffx.3759.1.S1_at--215--6691Chr04:5292038..5292062 (25 bp)
GTTCCAATAACATCCACATTCGGCT
LOC_Os04g09880
OsAffx.3759.1.S1_at--652--751Chr04:5292140..5292164 (25 bp)
ATGTAGAGCCATTTCTGCATCCAAT
LOC_Os04g09880
OsAffx.3759.1.S1_at--484--3031Chr04:5292162..5292373 (25 bp)
AATGCCAATCCTACTTCGGACGGAG
LOC_Os04g09880
OsAffx.3759.1.S1_at--919--5071Chr04:5292456..5292480 (25 bp)
GCAGCCAGAAGTCCACGTCGAAGAA
LOC_Os04g09880
Target Sequence 
GCGTCTCCAAGCAAAAGTCGTACAAAGTGAAAAAGACAATTAGGCTGGTAGTCAGAAAGAATAAGAGATCAGAAAGAGAC
GCGATCGGTGGCAAAAGGCTTACGATTGGTCCATTCGGGAAAAACGAGACTGGGAAGGCCGAGCTCTTCTTCGTCCTCCT
TCACTTCGATCCCCCAATCCTGAGCAAGGGGAGCGATCCGGAGCATGCAATGCTCTTTGCAAAGGTCGCGGGTGCTGAGG
CGACGTGCGACCTTGCGAAGAAGGATGAGTCTTTACTCCAGCGTTCCAATAACATCCACATTCGGCTTGGAGTTGATGGA
GATGTGGAGGTGGCGAAACCGGAGCCTACCCGCGTTGTCGGAGTTGGCGGCGCAAGGATTGTCGATGTAGAGCCATTTCT
GCATCCAATGCCAATCCTACTTCGGACGGAGGGCAAGAAATTGTCGCACGGCAGCCAGAAGTCCACGTCGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis