Browse Element(s) Details


OsAffx.3810.1.S1_at

Description tigr:9632.m01546
TID=OsAffx.3810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1715011/11hypothetical protein
LOC_Os08g233803/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17130OsAffx.3809.1.S1_at10/114+9357468..9367968Formin Homology 2 Domain containing protein
LOC_Os04g17140OsAffx.11392.2.S1_x_at8/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.3.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17140OsAffx.11392.1.S1_at1/114+9373101..9375602retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17150OsAffx.3810.1.S1_at11/114+9380713..9381216hypothetical protein
LOC_Os04g17160OsAffx.13845.1.S1_at11/114+9392071..9395862hypothetical protein
LOC_Os04g17160OsAffx.7216.1.S1_at1/114+9392071..9395862hypothetical protein
LOC_Os04g17170NANA4+9397639..9399639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17180NANA4+9400040..9401697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g17190NANA4+9404219..9407449transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3810.1.S1_at--1036--1011Chr04:9380847..9380871 (25 bp)
AGGTTATCAAGTCCACTTTCCATCG
LOC_Os04g17150
OsAffx.3810.1.S1_at--456--10291Chr04:9380863..9380887 (25 bp)
TTTCCATCGGATCAAACGGCATGTC
LOC_Os04g17150
OsAffx.3810.1.S1_at--1055--1933Chr04:9380878..9380902 (25 bp)
ACGGCATGTCATTCCGAGCTTTCTA
LOC_Os04g17150
OsAffx.3810.1.S1_at--1042--1554Chr04:9380894..9380918 (25 bp)
AGCTTTCTACCAACGGCAATCTCAA
LOC_Os04g17150
OsAffx.3810.1.S1_at--715--1811Chr04:9380944..9380968 (25 bp)
ACGGGCAACGCGCAAGTAACAACAA
LOC_Os04g17150
OsAffx.3810.1.S1_at--974--5451Chr04:9380976..9381000 (25 bp)
GAACGTCGGCTTTGAACGGCATGTT
LOC_Os04g17150
OsAffx.3810.1.S1_at--1080--9234Chr04:9381018..9381042 (25 bp)
TCCTATGGCCCATCTTGGGTTGGGA
LOC_Os04g17150
OsAffx.3810.1.S1_at--915--192Chr04:9381058..9381082 (25 bp)
ATTTCTCCATGGATTGAAGCCTTCC
LOC_Os04g17150
OsAffx.3810.1.S1_at--333--6236Chr04:9381114..9381138 (25 bp)
GATTCAGTTCGGACTCGGTTTGGGC
LOC_Os04g17150
OsAffx.3810.1.S1_at--328--6851Chr04:9381131..9381155 (25 bp)
GTTTGGGCCAGCCTGGATATACCAG
LOC_Os04g17150
OsAffx.3810.1.S1_at--440--6511Chr04:9381146..9381170 (25 bp)
GATATACCAGGACTAAAACGCCCGT
LOC_Os04g17150
Target Sequence 
AGGTTATCAAGTCCACTTTCCATCGGATCAAACGGCATGTCATTCCGAGCTTTCTACCAACGGCAATCTCAAGTTGAAGA
CATCATGTGCGGGTAGAACGGGCAACGCGCAAGTAACAACAATGGTGATGAACGTCGGCTTTGAACGGCATGTTTGGATG
GAGTTATACTATCCTATGGCCCATCTTGGGTTGGGAAGGAGTCCATCTATAATTTCTCCATGGATTGAAGCCTTCCAAAG
CAAGGAGTTTCTAGACAAGGAAGAAAAGATTCAGTTCGGACTCGGTTTGGGCCAGCCTGGATATACCAGGACTAAAACGC
CCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis