Browse Element(s) Details


OsAffx.3812.1.S1_x_at

Description tigr:9632.m01564
TID=OsAffx.3812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1733011/11hypothetical protein
LOC_Os12g225104/11retrotransposon protein, putative, unclassified
LOC_Os04g187301/11retrotransposon protein, putative, unclassified
LOC_Os11g118201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g17270NANA4+9445357..9448593transposon protein, putative, unclassified
LOC_Os04g17280OsAffx.22699.1.S1_x_at1/114+9449523..9452513retrotransposon protein, putative, unclassified
LOC_Os04g17290NANA4+9455892..9456873retrotransposon protein, putative, unclassified
LOC_Os04g17300OsAffx.5954.3.S1_x_at2/114+9459300..9460481Zinc knuckle family protein
LOC_Os04g17300OsAffx.5954.2.S1_at1/114+9459300..9460481Zinc knuckle family protein
LOC_Os04g17310NANA4+9461477..9461686hypothetical protein
LOC_Os04g17320OsAffx.30294.1.S1_at6/114+9463597..9470190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17320OsAffx.5954.1.S1_x_at4/114+9463597..9470190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17320OsAffx.5954.5.S1_x_at4/114+9463597..9470190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g17330OsAffx.3812.1.S1_at11/114+9471977..9472383hypothetical protein
LOC_Os04g17330OsAffx.3812.1.S1_x_at11/114+9471977..9472383hypothetical protein
LOC_Os04g17340OsAffx.27937.1.S1_at2/114+9476575..9479909retrotransposon protein, putative, unclassified
LOC_Os04g17340OsAffx.22699.1.S1_x_at1/114+9476575..9479909retrotransposon protein, putative, unclassified
LOC_Os04g17350NANA4+9480288..9482383retrotransposon protein, putative, unclassified
LOC_Os04g17360OsAffx.3813.1.S1_at10/114+9483655..9484729hypothetical protein
LOC_Os04g17370NANA4+9486757..9489945hypothetical protein
LOC_Os04g17380NANA4+9490353..9490871retrotransposon protein, putative, unclassified
LOC_Os04g17390OsAffx.22699.1.S1_x_at2/114+9491745..9494116retrotransposon protein, putative, unclassified
LOC_Os04g17400NANA4+9494227..9496145retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3812.1.S1_x_at--397--8634Chr04:10366295..10366318 (24 bp)
TGGGTCTGAAGTTAATGAGAGCAAT
LOC_Os04g18730
OsAffx.3812.1.S1_x_at--654--6011Chr04:9472266..9472290 (25 bp)
GAGAGCAATATCGTGCCCATCACTT
LOC_Os04g17330
OsAffx.3812.1.S1_x_at--311--3112Chr02:14560714..14561167 (25 bp)
AATATCGTGCCCATCACTTTGGACA
NONE
OsAffx.3812.1.S1_x_at--156--10154Chr12:12704826..12704849 (24 bp)
TATCGTGCCCATCACTTTGGACAAG
LOC_Os12g22510
OsAffx.3812.1.S1_x_at--261--4013Chr12:12704828..12704852 (25 bp)
CGTGCCCATCACTTTGGACAAGTTG
LOC_Os12g22510
OsAffx.3812.1.S1_x_at--524--5612Chr12:12704844..12704868 (25 bp)
GACAAGTTGACACCCGAACAGAAGA
LOC_Os12g22510
OsAffx.3812.1.S1_x_at--512--5315Chr12:12704867..12704939 (25 bp)
GAAGGATCTTGAGACTCGCCAAGGA
LOC_Os12g22510
OsAffx.3812.1.S1_x_at--736--6231Chr04:9472072..9472096 (25 bp)
GATGGAGAAATACAACAGGTCTCAG
LOC_Os04g17330
OsAffx.3812.1.S1_x_at--293--2491Chr04:9472059..9472083 (25 bp)
AACAGGTCTCAGATAGTACGACTCA
LOC_Os04g17330
OsAffx.3812.1.S1_x_at--959--7151Chr04:9472054..9472078 (25 bp)
GTCTCAGATAGTACGACTCAATCAG
LOC_Os04g17330
OsAffx.3812.1.S1_x_at--263--6491Chr04:9472048..9472072 (25 bp)
GATAGTACGACTCAATCAGGTGATA
LOC_Os04g17330
Target Sequence 
TGGGTCTGAAGTTAATGAGAGCAATATCGTGCCCATCACTTTGGACAAGTTGACACCCGAACAGAAGAAGGATCTTGAGA
CTCGCCAAGGAACAATCGTTCAGAGGTACAAGATGAAACTAGTTGCTGATGTTGCTGGGACAAGTTCTTCCAAGGATGGA
GAAATACAACAGGTCTCAGATAGTACGACTCAATCAGGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3812.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis