Browse Element(s) Details


OsAffx.3820.1.S1_at

Description tigr:9632.m01631
TID=OsAffx.3820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g18100NANA4+9977597..9977914hypothetical protein
LOC_Os04g18110Os.40360.1.S1_x_at1/114+9987225..9989206hypothetical protein
LOC_Os04g18130OsAffx.3820.1.S1_at11/114+9999392..9999664hypothetical protein
LOC_Os04g18140Os.52917.1.S1_at1/114+10003915..10005892transposon protein, putative, Mutator sub-class
LOC_Os04g18150NANA4+10008125..10008808transposon protein, putative, Mutator sub-class
LOC_Os04g18160OsAffx.22947.2.S1_x_at5/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.1.S1_x_at4/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.5.S1_x_at3/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18160OsAffx.22947.3.S1_x_at1/114+10010835..10015271retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g18170Os.54151.1.S1_x_at4/114+10019868..10021709retrotransposon protein, putative, unclassified
LOC_Os04g18170Os.48015.1.A1_x_at2/114+10019868..10021709retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3820.1.S1_at--924--9171Chr04:9999582..9999606 (25 bp)
TGCCGATGCGCACTCTCGGTGCCGC
LOC_Os04g18130
OsAffx.3820.1.S1_at--918--8531Chr04:9999549..9999573 (25 bp)
TGGAGCGCCGCCTCTATGAAAGTTG
LOC_Os04g18130
OsAffx.3820.1.S1_at--1030--5871Chr04:9999547..9999571 (25 bp)
GAGCGCCGCCTCTATGAAAGTTGGT
LOC_Os04g18130
OsAffx.3820.1.S1_at--89--1651Chr04:9999546..9999570 (25 bp)
AGCGCCGCCTCTATGAAAGTTGGTC
LOC_Os04g18130
OsAffx.3820.1.S1_at--14--4551Chr04:9999545..9999569 (25 bp)
GCGCCGCCTCTATGAAAGTTGGTCG
LOC_Os04g18130
OsAffx.3820.1.S1_at--277--4151Chr04:9999544..9999568 (25 bp)
CGCCGCCTCTATGAAAGTTGGTCGC
LOC_Os04g18130
OsAffx.3820.1.S1_at--149--4471Chr04:9999540..9999564 (25 bp)
GCCTCTATGAAAGTTGGTCGCGCTC
LOC_Os04g18130
OsAffx.3820.1.S1_at--60--9551Chr04:9999537..9999561 (25 bp)
TCTATGAAAGTTGGTCGCGCTCCGC
LOC_Os04g18130
OsAffx.3820.1.S1_at--989--10111Chr04:9999535..9999559 (25 bp)
TATGAAAGTTGGTCGCGCTCCGCCG
LOC_Os04g18130
OsAffx.3820.1.S1_at--250--10711Chr04:9999483..9999507 (25 bp)
TTGCGTTGTTTCCTCTCACCGGTGA
LOC_Os04g18130
OsAffx.3820.1.S1_at--448--4631Chr04:9999481..9999505 (25 bp)
GCGTTGTTTCCTCTCACCGGTGAGC
LOC_Os04g18130
Target Sequence 
TGCCGATGCGCACTCTCGGTGCCGCGCCGTCCCTGGAGCGCCGCCTCTATGAAAGTTGGTCGCGCTCCGCCGCTGGCTCT
CCTTTCTCTCCACCACCGCTTGCGTTGTTTCCTCTCACCGGTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis