Browse Element(s) Details


OsAffx.3893.1.S1_at

Description tigr:9632.m02381
TID=OsAffx.3893.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2542011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25400Os.10613.1.S1_at5/114+14686023..14691710Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus family protein, expressed
LOC_Os04g25410Os.18646.1.S1_at11/114+14693817..14697356pentatricopeptide, putative, expressed
LOC_Os04g25420OsAffx.3893.1.S1_at11/114+14713747..14714228hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_x_at10/114+14715768..14716963hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_at8/114+14715768..14716963hypothetical protein
LOC_Os04g25440Os.47907.1.S1_at10/114+14717790..14719616UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g25454Os.47463.1.S1_x_at5/114+14722174..14734758transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g25454Os.14491.2.S1_x_at5/114+14722174..14734758transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g25470NANA4+14737562..14745131retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3893.1.S1_at--34--8491Chr04:14713953..14713977 (25 bp)
TGGCAGGGTGGCACCAAGAGCCTCC
LOC_Os04g25420
OsAffx.3893.1.S1_at--727--9631Chr04:14713914..14713938 (25 bp)
TCAGGCGACAGATGCGGAGGCTATA
LOC_Os04g25420
OsAffx.3893.1.S1_at--135--6211Chr04:14713898..14713922 (25 bp)
GAGGCTATAGTGAGGTCGTCAAACA
LOC_Os04g25420
OsAffx.3893.1.S1_at--1109--8871Chr04:14713888..14713912 (25 bp)
TGAGGTCGTCAAACACGACTGTGGG
LOC_Os04g25420
OsAffx.3893.1.S1_at--1022--6171Chr04:14713849..14713873 (25 bp)
GAGGACCAAGCTGAGTGGAGCCCTT
LOC_Os04g25420
OsAffx.3893.1.S1_at--384--2691Chr04:14713842..14713866 (25 bp)
AAGCTGAGTGGAGCCCTTGAAGCTG
LOC_Os04g25420
OsAffx.3893.1.S1_at--1121--1651Chr04:14713831..14713855 (25 bp)
AGCCCTTGAAGCTGGCACTGGTAAC
LOC_Os04g25420
OsAffx.3893.1.S1_at--935--4711Chr04:14713821..14713845 (25 bp)
GCTGGCACTGGTAACGCTACTGTAG
LOC_Os04g25420
OsAffx.3893.1.S1_at--23--2611Chr04:14713809..14713833 (25 bp)
AACGCTACTGTAGTCGCTGGTGACG
LOC_Os04g25420
OsAffx.3893.1.S1_at--219--1971Chr04:14713803..14713827 (25 bp)
ACTGTAGTCGCTGGTGACGGAGCAA
LOC_Os04g25420
OsAffx.3893.1.S1_at--745--8611Chr04:14713792..14713816 (25 bp)
TGGTGACGGAGCAAGGGCTCCCACC
LOC_Os04g25420
Target Sequence 
TGGCAGGGTGGCACCAAGAGCCTCCTCCATGGCCTCCGCTCAGGCGACAGATGCGGAGGCTATAGTGAGGTCGTCAAACA
CGACTGTGGGGCTCGCGACAAGTGGAGGACCAAGCTGAGTGGAGCCCTTGAAGCTGGCACTGGTAACGCTACTGTAGTCG
CTGGTGACGGAGCAAGGGCTCCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis