Browse Element(s) Details


Os.10613.1.S1_at

Description gb:AK068015.1
DB_XREF= gi:32978033
TID=Os.10613.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131B07, full insert sequence.
FL= gb:AK068015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g254005/11Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25380Os.47907.1.S1_at1/114+14667889..14669379Cytokinin-O-glucosyltransferase 2, putative
LOC_Os04g25390Os.48948.1.S1_x_at10/114+14670867..14679132expressed protein
LOC_Os04g25390OsAffx.26155.1.S1_x_at9/114+14670867..14679132expressed protein
LOC_Os04g25390Os.48948.1.S1_at7/114+14670867..14679132expressed protein
LOC_Os04g25390Os.33708.2.S1_at1/114+14670867..14679132expressed protein
LOC_Os04g25400Os.10613.1.S1_at5/114+14686023..14691710Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus family protein, expressed
LOC_Os04g25410Os.18646.1.S1_at11/114+14693817..14697356pentatricopeptide, putative, expressed
LOC_Os04g25420OsAffx.3893.1.S1_at11/114+14713747..14714228hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_x_at10/114+14715768..14716963hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_at8/114+14715768..14716963hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0050454molecular_functioncoenzyme F420 hydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10613.1.S1_at--82--7551Chr04:14691115..14691137 (23 bp)
GTGGCGTCAGGCAACCATTTGTTAT
LOC_Os04g25400
Os.10613.1.S1_at--992--6791Chr04:14691322..14691345 (24 bp)
GTTATAGCCTTCCTACTGAATCTGA
LOC_Os04g25400
Os.10613.1.S1_at--153--10731Chr04:14691457..14691481 (25 bp)
TTGCTCGCTACTCTCTGGATTATCA
LOC_Os04g25400
Os.10613.1.S1_at--795--5211Chr04:14691491..14691515 (25 bp)
GAATTACCTCCATGTGAATCGGGCA
LOC_Os04g25400
Os.10613.1.S1_at--11--2351NONE
AAAGAGCGGAGCAGCACATTCCTTC
NONE
Os.10613.1.S1_at--735--5111Chr04:14691635..14691659 (25 bp)
GCACATTCCTTCCTATGCCAAGAAG
LOC_Os04g25400
Os.10613.1.S1_at--46--3551Chr04:14691689..14691713 (25 bp)
CATCGAGTCGATGCTCCAGTAGCAT
NONE
Os.10613.1.S1_at--92--5011Chr04:14691710..14691734 (25 bp)
GCATGGGACGCTAGTCTGCATTCTA
NONE
Os.10613.1.S1_at--955--171Chr04:14691745..14691769 (25 bp)
ATTTTTCCTCATATCGACTTGTTCA
NONE
Os.10613.1.S1_at--542--6791Chr04:14691791..14691815 (25 bp)
GTTATGTACATTCCTGAGCACACAG
NONE
Os.10613.1.S1_at--71--10171Chr04:14691861..14691885 (25 bp)
TATCTGACTGTCTTCCTGGGAGAAT
NONE
Target Sequence 
GTGGCGTCAGGCAACCATTTGTTATCGAGACGGTTAAAGCTGANGATGAAGCAAAACAGGGGAGAGGACCTTCTCAGCCA
GCTCCGACATTTGTCGGCAATGTTATAGCCTTCCTACTGAATCTGATTGGGCCGAAGGGGCTAGAGTTTGCTCGCTACTC
TCTGGATTATCACACGATAAGGAATTACCTCCATGTGAATCGGGCATGGGGCAAGCAAAGAGCGGAGCAGCACATTCCTT
CCTATGCCAAGAAGATTGTGGAGGCGTACGACAAGGACGGACGCATCGAGTCGATGCTCCAGTAGCATGGGACGCTAGTC
TGCATTCTAGATTATTATTATTTTTCCTCATATCGACTTGTTCATTCTAGTCAGTATATCCCNTAGTTATGTACATTCCT
GAGCACACAGCCAGGGTTTAGGGGAATTTCCTCTTTACTAATTTTTTACATGTCTTATCTGACTGTCTTCCTGGGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis