Browse Element(s) Details


OsAffx.3924.1.S1_at

Description tigr:9632.m02641
TID=OsAffx.3924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2799011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27960OsAffx.3923.1.S1_at11/114+16318382..16322121B3 DNA binding domain containing protein
LOC_Os04g27969NANA4+16329668..16330075NA
LOC_Os04g27980Os.54178.1.S1_at6/114+16332670..16333988Glycosyl hydrolases family 18 protein
LOC_Os04g27990OsAffx.3924.1.S1_at11/114+16342890..16343398B3 DNA binding domain containing protein
LOC_Os04g28000OsAffx.26193.1.S1_at11/114+16344903..16346252B3 DNA binding domain containing protein
LOC_Os04g28010Os.26685.1.A1_at11/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.24293.1.S1_at2/114+16348739..16355292expressed protein
LOC_Os04g28010OsAffx.14337.1.S1_x_at1/114+16348739..16355292expressed protein
LOC_Os04g28020Os.55704.1.S1_at11/114+16360908..16363417expressed protein
LOC_Os04g28030OsAffx.14010.1.S1_at11/114+16364252..16364767hypothetical protein
LOC_Os04g28040Os.54222.1.S1_at11/114+16365821..16371956expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3924.1.S1_at--930--9451Chr04:16342924..16342948 (25 bp)
TCGGCGCAGCGAAGGCCATGCAGCT
LOC_Os04g27990
OsAffx.3924.1.S1_at--676--5051Chr04:16342929..16342953 (25 bp)
GCAGCGAAGGCCATGCAGCTCAAGG
LOC_Os04g27990
OsAffx.3924.1.S1_at--354--4111Chr04:16342933..16342957 (25 bp)
CGAAGGCCATGCAGCTCAAGGTGCT
LOC_Os04g27990
OsAffx.3924.1.S1_at--1096--871Chr04:16342936..16342960 (25 bp)
AGGCCATGCAGCTCAAGGTGCTGAT
LOC_Os04g27990
OsAffx.3924.1.S1_at--624--651Chr04:16342941..16342965 (25 bp)
ATGCAGCTCAAGGTGCTGATGCCTT
LOC_Os04g27990
OsAffx.3924.1.S1_at--719--1571Chr04:16342945..16342969 (25 bp)
AGCTCAAGGTGCTGATGCCTTCTTC
LOC_Os04g27990
OsAffx.3924.1.S1_at--192--9731Chr04:16342948..16342972 (25 bp)
TCAAGGTGCTGATGCCTTCTTCCTT
LOC_Os04g27990
OsAffx.3924.1.S1_at--80--1051Chr04:16342951..16342975 (25 bp)
AGGTGCTGATGCCTTCTTCCTTCCA
LOC_Os04g27990
OsAffx.3924.1.S1_at--684--8891Chr04:16343202..16343226 (25 bp)
TGAGCCCGGTCGGCAAGGTCTGGGA
LOC_Os04g27990
OsAffx.3924.1.S1_at--396--6711Chr04:16343326..16343350 (25 bp)
GTTCGTGGTGGTCCGGCACGAGGGC
LOC_Os04g27990
OsAffx.3924.1.S1_at--779--5091Chr04:16343341..16343365 (25 bp)
GCACGAGGGCGGTGGCGTGCTCACC
LOC_Os04g27990
Target Sequence 
TCGGCGCAGCGAAGGCCATGCAGCTCAAGGTGCTGATGCCTTCTTCCTTCCACAAGATGCGCATCTCCGACGAGCTCGCC
GCGGACCTCCTGGGCGAGCGCGGCGACGGCGGCGGCGGCGGCGGTGGAGCGCCGCGGCGGGCGGCGCGCGTGGTGAGCCC
GGTCGGCAAGGTCTGGGACGTCGAGGTCGGCCGGGACGACGACGGCGACGGCGGCGGCGCGTTCCTGGGGCGCGGGTGGG
CGGAGTTCGCGGCGGCGCACGGCCTGGGCATGGGGTGGTTCGTGGTGGTCCGGCACGAGGGCGGTGGCGTGCTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis