Browse Element(s) Details


OsAffx.3927.1.S1_at

Description tigr:9632.m02657
TID=OsAffx.3927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL021889 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2816011/11Response regulator receiver domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28120OsAffx.14012.1.S1_at11/114+16415110..16417748Response regulator receiver domain containing protein, expressed
LOC_Os04g28130Os.23483.1.A1_s_at11/114+16427171..16430631myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g28140OsAffx.26197.1.S1_at8/114+16434443..16434965hypothetical protein
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3927.1.S1_at--154--2411Chr04:16444380..16444403 (24 bp)
AAACAAATTTCTACTCATCTGCAGA
LOC_Os04g28160
OsAffx.3927.1.S1_at--555--2731Chr04:16445088..16445112 (25 bp)
AAGCAAGGCATCATTTACAAAGGGA
LOC_Os04g28160
OsAffx.3927.1.S1_at--489--1471Chr04:16445144..16445168 (25 bp)
AGAATCATCTCACATGTCGTACCAT
LOC_Os04g28160
OsAffx.3927.1.S1_at--835--9311Chr04:16445184..16445208 (25 bp)
TCCCTACACTAATCAGCCTGCAGAA
LOC_Os04g28160
OsAffx.3927.1.S1_at--717--651Chr04:16445350..16445374 (25 bp)
ATGCAAATCCACTCTGAAGATGTTG
LOC_Os04g28160
OsAffx.3927.1.S1_at--159--5851Chr04:16445405..16445429 (25 bp)
GAGCCTTGCAGGATGGGACTGCCTT
LOC_Os04g28160
OsAffx.3927.1.S1_at--603--1191Chr04:16445441..16445465 (25 bp)
AGTATTCCAGTGATCCTTTTAGTAA
LOC_Os04g28160
OsAffx.3927.1.S1_at--511--2351Chr04:16445503..16445527 (25 bp)
AAAGCTAATGCCATAGACTCATCTG
LOC_Os04g28160
OsAffx.3927.1.S1_at--512--151Chr04:16445534..16445558 (25 bp)
ATTACCAGGTTGCTGTTGTCCTCAC
LOC_Os04g28160
OsAffx.3927.1.S1_at--574--671Chr04:16445593..16445617 (25 bp)
ATGAACAAGGTTACTACTTCTGATG
LOC_Os04g28160
OsAffx.3927.1.S1_at--334--6191Chr04:16445636..16445660 (25 bp)
GAGGCAAGGCAACGGTTTCCCGCCT
LOC_Os04g28160
Target Sequence 
AAACAAATTTCTACTCATCTGCAGAAACATCGACTGCAACTGAAAAAGAAGTTAAGCAAGGCATCATTTACAAAGGGAAG
CAATGAGGATACATCAAATCCTAGTGCAAAGAATCATCTCACATGTCGTACCATGACCCTGCAGCCTCATCCCTACACTA
ATCAGCCTGCAGAAACAACTATGCAAATCCACTCTGAAGATGTTGAACATGATGATGTTTATGATGCAATGCGAAGAGCC
TTGCAGGATGGGACTGCCTTTGATGAGTCCAAGTATTCCAGTGATCCTTTTAGTAATGAAGATGAAGATGTGGTAGGAGA
TGGATATGCAGATAAAGCTAATGCCATAGACTCATCTGGTGATCATTACCAGGTTGCTGTTGTCCTCACTACACCACACA
ACGTGGACTATACACAAGAGATCATGAACAAGGTTACTACTTCTGATGATGTGCAAGTCACTAGGGGAGGCAAGGCAACG
GTTTCCCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis