Browse Element(s) Details


OsAffx.3965.1.S1_at

Description tigr:9632.m02987
TID=OsAffx.3965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AT3g11590F24K9_26
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3140011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31350Os.49054.1.S1_at10/114+18570301..18571461expressed protein
LOC_Os04g31360OsAffx.26268.1.S1_at11/114+18573803..18574312hypothetical protein
LOC_Os04g31370Os.47130.4.A1_x_at1/114+18578034..18578360retrotransposon protein, putative, unclassified
LOC_Os04g31390Os.52415.1.S1_at11/114+18583326..18588735Vacuolar protein sorting 11, putative, expressed
LOC_Os04g31400OsAffx.3965.1.S1_at11/114+18592234..18595932expressed protein
LOC_Os04g31410Os.51437.1.S1_at11/114+18599036..18599823expressed protein
LOC_Os04g31420Os.46012.2.S1_x_at8/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.46012.3.S1_x_at7/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.27088.1.A1_x_at6/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31420Os.54691.1.S1_x_at1/114+18603406..18608201retrotransposon protein, putative, unclassified
LOC_Os04g31430OsAffx.26269.1.S1_at11/114+18613798..18614088hypothetical protein
LOC_Os04g31440NANA4+18618289..18619494Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3965.1.S1_at--245--2731Chr04:18595364..18595388 (25 bp)
AAGCACGGCTTCAGTTCGAGGAGAA
LOC_Os04g31400
OsAffx.3965.1.S1_at--187--1871Chr04:18595415..18595439 (25 bp)
ACGAGCTTCAGGCATATTTGGACAC
LOC_Os04g31400
OsAffx.3965.1.S1_at--1091--711Chr04:18595463..18595487 (25 bp)
ATGATCAAATGACACTGCTCCGCGC
LOC_Os04g31400
OsAffx.3965.1.S1_at--1049--9091Chr04:18595478..18595502 (25 bp)
TGCTCCGCGCATCCGAAAACGGTAG
LOC_Os04g31400
OsAffx.3965.1.S1_at--1087--8931Chr04:18595569..18595593 (25 bp)
TGACGACTCGGCATCTGAAGGAAGT
LOC_Os04g31400
OsAffx.3965.1.S1_at--367--3231Chr04:18595632..18595656 (25 bp)
CAAGAGCTACACCTGGAGTTACACT
LOC_Os04g31400
OsAffx.3965.1.S1_at--321--8031Chr04:18595646..18595670 (25 bp)
GGAGTTACACTCCAACCTCAAAGGA
LOC_Os04g31400
OsAffx.3965.1.S1_at--513--9991Chr04:18595716..18595740 (25 bp)
TAGCTCCTGCGGCTTTGACAGAAAG
LOC_Os04g31400
OsAffx.3965.1.S1_at--398--8631Chr04:18595797..18595821 (25 bp)
TGGGATGCTGAACTTTGAACACGAT
LOC_Os04g31400
OsAffx.3965.1.S1_at--1144--1011Chr04:18595828..18595852 (25 bp)
AGGTACCTGGCAATCAAGAATCTCA
LOC_Os04g31400
OsAffx.3965.1.S1_at--323--8631Chr04:18595869..18595893 (25 bp)
TGGGTCTGGGTTCATCGTGTCACAA
LOC_Os04g31400
Target Sequence 
AAGCACGGCTTCAGTTCGAGGAGAAAAACGCAGCCATCAACCAGCTGCACGACGAGCTTCAGGCATATTTGGACACCAAG
AAGGAGCATGGACAGTCAAATGATCAAATGACACTGCTCCGCGCATCCGAAAACGGTAGGGAAATTGCTGATAACATTCA
GAAGAACAGCGGAGAGTGCGATGATGAGGATGAAGACGATGACGATGACGACTCGGCATCTGAAGGAAGTGACATGCACT
CGATTGAGCTGAACGTCGATGGCAACAGCAAGAGCTACACCTGGAGTTACACTCCAACCTCAAAGGACAGGAAGAGGAAT
GCATCATTTTCACAGAGAGGGATGGATAGTGGTAGCTCCTGCGGCTTTGACAGAAAGTTTCAGGAAACGGGTGAAGAACT
ACTGGAAGGAGACTGGGCAGAAGGATGCAGCAATGGGATGCTGAACTTTGAACACGATGAGGAGAGGTACCTGGCAATCA
AGAATCTCAGGGAGCAGATGCTAGCTGGGTCTGGGTTCATCGTGTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis