Browse Element(s) Details


OsAffx.4030.1.S1_at

Description tigr:9632.m03746
TID=OsAffx.4030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=C2H2-type zinc finger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3952011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39450Os.34697.1.S1_at11/114+23280931..23283511Uncharacterised protein family containing protein, expressed
LOC_Os04g39460OsAffx.14204.1.S1_at11/114+23287746..23290532NB-ARC domain containing protein, expressed
LOC_Os04g39470OsAffx.14205.1.S1_at11/114+23291540..23292855Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g39489Os.7445.1.S1_at11/114+23293688..23303872amino acid transporter family protein, putative, expressed
LOC_Os04g39510OsAffx.26390.1.S1_at11/114+23305096..23306172hypothetical protein
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39530NANA4+23316323..23318391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g39540Os.23802.1.A1_at10/114+23324866..23327760expressed protein
LOC_Os04g39560Os.12231.1.S1_a_at11/114+23334663..23339840expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4030.1.S1_at--143--4631Chr04:23312745..23312769 (25 bp)
GCGAGGAGGGCTTGGTCGGCCCACC
LOC_Os04g39520
OsAffx.4030.1.S1_at--1156--4111Chr04:23312829..23312853 (25 bp)
CGCAGCAACACCAGTGCTTACGGTG
LOC_Os04g39520
OsAffx.4030.1.S1_at--562--1111Chr04:23312841..23312865 (25 bp)
AGTGCTTACGGTGCCCCATGGTCTT
LOC_Os04g39520
OsAffx.4030.1.S1_at--243--8451Chr04:23312888..23312912 (25 bp)
GGCCACATGCGGAAGCATTTTCTCG
LOC_Os04g39520
OsAffx.4030.1.S1_at--769--611Chr04:23312894..23312918 (25 bp)
ATGCGGAAGCATTTTCTCGAGGCCA
LOC_Os04g39520
OsAffx.4030.1.S1_at--304--8191Chr04:23312898..23312922 (25 bp)
GGAAGCATTTTCTCGAGGCCAAGGA
LOC_Os04g39520
OsAffx.4030.1.S1_at--220--4951Chr04:23312902..23312926 (25 bp)
GCATTTTCTCGAGGCCAAGGAGCAG
LOC_Os04g39520
OsAffx.4030.1.S1_at--751--4051Chr04:23313000..23313024 (25 bp)
CGATGATGGCCAACGCCGCGCCAGT
LOC_Os04g39520
OsAffx.4030.1.S1_at--607--5071Chr04:23313190..23313214 (25 bp)
GCAGCCGGGCGTGAACATGTTTGAC
LOC_Os04g39520
OsAffx.4030.1.S1_at--251--2111Chr04:23313204..23313228 (25 bp)
ACATGTTTGACCTCAACGAGTTGCC
LOC_Os04g39520
OsAffx.4030.1.S1_at--120--6851Chr04:23313208..23313232 (25 bp)
GTTTGACCTCAACGAGTTGCCCAAC
LOC_Os04g39520
Target Sequence 
GCGAGGAGGGCTTGGTCGGCCCACCGCCGCCGCCGCCGCCGCCACCGCCGCCGCCCGCACCCGCGCCTGCGCTCGCGCCC
GCGCCGCAGCAACACCAGTGCTTACGGTGCCCCATGGTCTTCCCCACCGGGCAGGCTCTCGGCGGCCACATGCGGAAGCA
TTTTCTCGAGGCCAAGGAGCAGGAGCAGCTGCTCGCCATCGACATCGCCAACGCCAACGCCAACGCCAACGCCAACGCCG
CGCCGGGGCCGCCGCCGATGATGGCCAACGCCGCGCCAGTGCCGCCGCCGTCGATGGCCAACGGCGCCGGGCCCGTGCCG
CCGCCGATCGCCGTCGCCCCTCCTCCCGCGCCGCCGATCGCCGGAGCCGCTCCTCCTCCGCCCATGGCCAACGGCGCCGC
GGCGGCTGCGCCACCGGGGGGCAACCCGGCGCCACCTGCTGGGCCGCAGCCGGGCGTGAACATGTTTGACCTCAACGAGT
TGCCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis