Browse Element(s) Details


OsAffx.4058.1.S1_x_at

Description tigr:9632.m04068
TID=OsAffx.4058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4257011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein
LOC_Os04g42550OsAffx.26431.1.S1_at11/114+24959247..24959735hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_x_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42570OsAffx.4058.1.S1_x_at11/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570OsAffx.23957.2.S1_x_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570Os.55217.1.S1_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42580Os.7025.1.S1_s_at11/114+24968781..24972481carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
LOC_Os04g42590Os.52657.1.S1_at11/114+24972383..24973850expressed protein
LOC_Os04g42590OsAffx.23890.4.S1_x_at1/114+24972383..24973850expressed protein
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4058.1.S1_x_at--855--8351Chr04:24966746..24966770 (25 bp)
GGCGGTGTGGGTGGGTACTACTACG
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--469--9871Chr04:24966761..24966785 (25 bp)
TACTACTACGGGTGCGGCCCGACCA
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--736--7331Chr04:24966827..24966851 (25 bp)
GTGCACTACCCGTCGTACGGCCAGG
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--57--3251Chr04:24966981..24967005 (25 bp)
CAAGCTCGGCCGTCTACGGCAACGG
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--995--8351Chr04:24967016..24967040 (25 bp)
GGCGGCAACGCGTTCATGATGCCGA
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--618--1831Chr04:24967023..24967047 (25 bp)
ACGCGTTCATGATGCCGATGGGCGC
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--494--391Chr04:24967065..24967089 (25 bp)
ATCACGGCGGGCAGAGCAGCGCCTA
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--589--4011Chr04:24967138..24967162 (25 bp)
CGTCGACCCGTACGCGGCCATGAGA
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--769--3911Chr04:24967152..24967176 (25 bp)
CGGCCATGAGAAGCGCGTACGAGCT
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--292--2671Chr04:24967162..24967186 (25 bp)
AAGCGCGTACGAGCTCTCGCAGGGC
LOC_Os04g42570
OsAffx.4058.1.S1_x_at--143--7211Chr04:24967192..24967216 (25 bp)
GTCGTCGTCGGTGAGCGTCGCGAAG
LOC_Os04g42570
Target Sequence 
GGCGGTGTGGGTGGGTACTACTACGGGTGCGGCCCGACCATCGCGTTCGGCGGCGGCGGCCAGCAGCCGGCGCCGCTCGC
CGTGCACTACCCGTCGTACGGCCAGGCCAGCGGGTGGTGCAAGCCGGAGCAGGACGCGGTGATCGCGGCCGGGCACTGCG
CGACGGACCTCCAGCACCTGCACCTCGGGAGCGGCGGCGCCGCCGCCACCCACAACTTCTTCCAGCAGCCGGCGTCAAGC
TCGGCCGTCTACGGCAACGGCGGCGGCGGCGGCGGCAACGCGTTCATGATGCCGATGGGCGCCGTGGTGGCCGCCGCCGA
TCACGGCGGGCAGAGCAGCGCCTACGGCGGTGGCGACGAGAGCGGGAGGCTCGTCGTGGGGTACGACGGCGTCGTCGACC
CGTACGCGGCCATGAGAAGCGCGTACGAGCTCTCGCAGGGCTCGTCGTCGTCGTCGGTGAGCGTCGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4058.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis