Browse Element(s) Details


OsAffx.4065.1.S1_at

Description tigr:9632.m04102
TID=OsAffx.4065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4288911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4065.1.S1_at--125--9271Chr04:25161701..25161725 (25 bp)
TCCTGCTGCTCTCAAGAACCATGTG
LOC_Os04g42889
OsAffx.4065.1.S1_at--687--4771Chr04:25161697..25161721 (25 bp)
GCTGCTCTCAAGAACCATGTGCATG
LOC_Os04g42889
OsAffx.4065.1.S1_at--977--2631Chr04:25161685..25161709 (25 bp)
AACCATGTGCATGTTCAAGCCATTC
LOC_Os04g42889
OsAffx.4065.1.S1_at--650--7331Chr04:25161679..25161703 (25 bp)
GTGCATGTTCAAGCCATTCATCTTC
LOC_Os04g42889
OsAffx.4065.1.S1_at--884--731Chr04:25161675..25161699 (25 bp)
ATGTTCAAGCCATTCATCTTCCATG
LOC_Os04g42889
OsAffx.4065.1.S1_at--656--3551Chr04:25161661..25161685 (25 bp)
CATCTTCCATGGTTAGTAGTGAGTA
LOC_Os04g42889
OsAffx.4065.1.S1_at--943--6931Chr04:25161646..25161670 (25 bp)
GTAGTGAGTACAAACAAGACGAGGG
LOC_Os04g42889
OsAffx.4065.1.S1_at--33--8151Chr04:25161621..25161645 (25 bp)
GGAAAGCTACTTTATACCTTGACGA
LOC_Os04g42889
OsAffx.4065.1.S1_at--763--9891Chr04:25161614..25161638 (25 bp)
TACTTTATACCTTGACGAGGTTGCT
LOC_Os04g42889
OsAffx.4065.1.S1_at--520--4751Chr04:25161208..25161616 (25 bp)
GCTGATGTCTGCAGTGTGCACACTT
LOC_Os04g42889
OsAffx.4065.1.S1_at--208--771Chr04:25161204..25161441 (25 bp)
ATGTCTGCAGTGTGCACACTTCATC
LOC_Os04g42889
Target Sequence 
TCCTGCTGCTCTCAAGAACCATGTGCATGTTCAAGCCATTCATCTTCCATGGTTAGTAGTGAGTACAAACAAGACGAGGG
GGAAAGCTACTTTATACCTTGACGAGGTTGCTGATGTCTGCAGTGTGCACACTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis