Browse Element(s) Details


OsAffx.4119.1.S1_at

Description tigr:9632.m04639
TID=OsAffx.4119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4796010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47912Os.53375.1.S1_at11/114+28270308..28275324expressed protein
LOC_Os04g47920OsAffx.4118.1.S1_at11/114+28278967..28279242hypothetical protein
LOC_Os04g47930Os.56757.1.S1_at9/114+28280903..28283389Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os04g47940NANA4+28287793..28288194transposon protein, putative, unclassified
LOC_Os04g47950OsAffx.14321.1.S1_at11/114+28295409..28297032hypothetical protein
LOC_Os04g47960OsAffx.4119.1.S1_at10/114+28299184..28300682hypothetical protein
LOC_Os04g47970OsAffx.26512.1.S1_at11/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47970Os.19300.1.S1_at10/114+28302787..28306558ORMDL family protein, expressed
LOC_Os04g47990Os.4182.2.S1_x_at11/114+28315203..28318450dof zinc finger protein, putative, expressed
LOC_Os04g47990Os.4182.1.S1_at11/114+28315203..28318450dof zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4119.1.S1_at--414--8491Chr04:28299509..28299533 (25 bp)
TGGCTACACGGCAGCGCCCGTCTAG
LOC_Os04g47960
OsAffx.4119.1.S1_at--851--1411Chr04:28299561..28299585 (25 bp)
AGACAACGATGATGGTGGCTTCAGT
LOC_Os04g47960
OsAffx.4119.1.S1_at--937--611Chr04:28299662..28299686 (25 bp)
ATGCGGCCCGTGCTCAGCACATCAT
LOC_Os04g47960
OsAffx.4119.1.S1_at--754--3351NONE
CACGCATCGGCTTCGCAAAAACAAA
NONE
OsAffx.4119.1.S1_at--704--5111Chr04:28300341..28300363 (23 bp)
GCAAAAACAAAATCCACCCACAAGG
LOC_Os04g47960
OsAffx.4119.1.S1_at--1059--1671Chr04:28300373..28300397 (25 bp)
AGCCGGCAGCCGCAGGTCTAATTTT
LOC_Os04g47960
OsAffx.4119.1.S1_at--158--5051Chr04:28300378..28300402 (25 bp)
GCAGCCGCAGGTCTAATTTTCAGGA
LOC_Os04g47960
OsAffx.4119.1.S1_at--591--7451Chr04:28300387..28300411 (25 bp)
GGTCTAATTTTCAGGATGCGGAAAC
LOC_Os04g47960
OsAffx.4119.1.S1_at--1154--591Chr04:28300402..28300426 (25 bp)
ATGCGGAAACGCAGTGTGCCAGCGA
LOC_Os04g47960
OsAffx.4119.1.S1_at--1119--7451Chr04:28300415..28300435 (21 bp)
GTGTGCCAGCGAGCACAGCCGCTTA
LOC_Os04g47960
OsAffx.4119.1.S1_at--808--8331Chr04:28300602..28300626 (25 bp)
GGCTGCTCCTTTCCAGAAGGCGGAA
LOC_Os04g47960
Target Sequence 
TGGCTACACGGCAGCGCCCGTCTAGGCGCGATGACGGCTTGGGGGTGGATGAAGACAACGATGATGGTGGCTTCAGTGGC
GGAGGCGGAGGTGGTTGCGGAGGCGGCGCCCTTGCGGCTCGGTCGTGCGCAGGGGCTGCGTCGGCACCCTGGCATGCGGC
CCGTGCTCAGCACATCATCCTCCTCGTCACCATTCTCCATGCTCATCCACGCATCGGCTTCGCAAAAACAAAATCCACCC
ACAAGGCCACGACCCAGCCGGCAGCCGCAGGTCTAATTTTCAGGATGCGGAAACGCAGTGTGCCAGCGAGCACAGCCGCT
TACGGCTGCTCCTTTCCAGAAGGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis