Browse Element(s) Details


OsAffx.4168.1.S1_s_at

Description tigr:9632.m05198
TID=OsAffx.4168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5356011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53544NANA4+31691189..31691506transposon protein, putative, unclassified
LOC_Os04g53550OsAffx.4167.1.S1_at9/114+31706594..31709535Cytochrome c biogenesis ATP-binding export protein ccmA, putative
LOC_Os04g53560OsAffx.4168.1.S1_s_at11/114+31713539..31714647expressed protein
LOC_Os04g53580Os.52543.1.S1_at9/114+31718401..31720127p21-rho-binding domain-containing protein, putative, expressed
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4168.1.S1_s_at--786--3851Chr04:31713853..31713877 (25 bp)
CTGAGACGTCGTCCATGTCAGCTGG
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--1110--2151Chr04:31713928..31713952 (25 bp)
ACAGCCAGGAGATGTGCCAGGAACC
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--317--10531Chr04:31713992..31714016 (25 bp)
TTCTTCGTTTGCTACTTCCTATGAC
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--524--3731Chr04:31714003..31714027 (25 bp)
CTACTTCCTATGACGACGCATCGTT
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--46--1851Chr04:31714018..31714042 (25 bp)
ACGCATCGTTCATCACGTCGGAGAT
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--1029--4051Chr04:31714058..31714082 (25 bp)
CGATGACGATGATTCCTTGCAGGAC
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--791--951Chr04:31714078..31714102 (25 bp)
AGGACACTGCCTGTTCTTCTGCAGC
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--817--2831Chr04:31714410..31714434 (25 bp)
AAGTATTTTGTCGATGCCAGTTCAC
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--402--5351Chr04:31714520..31714544 (25 bp)
GAAGAAAGGGCTCTGCTTGGTCCCT
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--355--7251Chr04:31714539..31714563 (25 bp)
GTCCCTCTCTCCATGTTGATAAATT
LOC_Os04g53560
OsAffx.4168.1.S1_s_at--753--6471Chr04:31714556..31714580 (25 bp)
GATAAATTACCTCGGATGATTGATT
LOC_Os04g53560
Target Sequence 
CTGAGACGTCGTCCATGTCAGCTGGAGAGAGCAGCTGGGCGATGCACATTGCGAACTTCTTGGCATCACCGTACAACAGC
CAGGAGATGTGCCAGGAACCAGTGATCTCTGGCAGCAGCAGCTTCTCCTCTGGCTTCTCTTCTTCGTTTGCTACTTCCTA
TGACGACGCATCGTTCATCACGTCGGAGATGATGTGTGACGACGACGATGACGATGATTCCTTGCAGGACACTGCCTGTT
CTTCTGCAGCTGCCCCTAAGTTAACTAGCAACTTGAACAATGTTGATATGAAGTCAATGGCAACAATGGAGGCTAAAGAT
ATCAACATCACACAGCTGGCCAAGTATTTTGTCGATGCCAGTTCACGACAGCCGGCGGCTGAAGTGCTTCAAGAAACAGT
CAGTGTTGATAACAACAACGACAAGTCCTTGTATGAATGTAATGAGCTGAGGAAGAAAGGGCTCTGCTTGGTCCCTCTCT
CCATGTTGATAAATTACCTCGGATGATTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4168.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis