Browse Element(s) Details


OsAffx.4201.1.S1_at

Description tigr:9632.m05639
TID=OsAffx.4201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uracil-DNA glycosylase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5773011/11Uracil-DNA glycosylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57720Os.24952.1.S1_at10/114+34156916..34158030Two-component response regulator ARR3, putative, expressed
LOC_Os04g57730OsAffx.4201.1.S1_at11/114+34163604..34168701Uracil-DNA glycosylase, putative, expressed
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0004844molecular_functionuracil DNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4201.1.S1_at--367--7331Chr04:34166621..34166642 (22 bp)
GTGCAGGGTGTTCTTATGCTCAACA
LOC_Os04g57730
OsAffx.4201.1.S1_at--1116--10391Chr04:34165572..34165596 (25 bp)
TTTTGAAATCCGCTCATCCATCAGG
LOC_Os04g57730
OsAffx.4201.1.S1_at--811--9231Chr04:34165556..34165580 (25 bp)
TCCATCAGGGCTGTCTGCAAGCAGA
LOC_Os04g57730
OsAffx.4201.1.S1_at--522--411Chr04:34165301..34165325 (25 bp)
ATCAGGATTGCCCTATATGCGGCGC
LOC_Os04g57730
OsAffx.4201.1.S1_at--796--611Chr04:34165285..34165309 (25 bp)
ATGCGGCGCCATAATATCTATTTGA
LOC_Os04g57730
OsAffx.4201.1.S1_at--1109--10751Chr04:34165264..34165288 (25 bp)
TTGATGCTAGACAACCCACCAATGG
LOC_Os04g57730
OsAffx.4201.1.S1_at--12--2971Chr04:34164838..34165050 (25 bp)
AATGGCTGGCACTTTTCTAAAACGA
LOC_Os04g57730
OsAffx.4201.1.S1_at--514--1311Chr04:34164801..34164825 (25 bp)
AGAGGCTGGGACTATCTGCCATTGA
LOC_Os04g57730
OsAffx.4201.1.S1_at--787--9611Chr04:34164749..34164773 (25 bp)
TCATGTGGTCTGTCTGCCTGACAAC
LOC_Os04g57730
OsAffx.4201.1.S1_at--1139--831Chr04:34163685..34163709 (25 bp)
ATGGAAGCATCGCAAGTCGCCGATC
LOC_Os04g57730
OsAffx.4201.1.S1_at--425--2811Chr04:34163654..34163678 (25 bp)
AAGATCGGCACGCACTTGGATGGAA
LOC_Os04g57730
Target Sequence 
GTGCAGGGTGTTCTTATGCTCAACACTGTATTAACTGTGAGAGAACATCAAGCCAATTCACATGCCAAGAAAGGATGGGA
GCAATTTACTGATGCTGTCATTAAGACAATATCACTGAAGAAATCTGGAATAGTCTTTATTCTCTGGGGAAACTCAGCTC
AAGCAAAGACAAGATTGATTGATGAAACAAAACACCACATTTTGAAATCCGCTCATCCATCAGGGCTGTCTGCAAGCAGA
GGTTTCTTTGGATGCAGCACTTGCATATCAGGATTGCCCTATATGCGGCGCCATAATATCTATTTGATGCTAGACAACCC
ACCAATGGCTGGCACTTTTCTAAAACGAATCAGATCTTGGAGAGGCTGGGACTATCTGCCATTGATTGGCAACTCTAGAC
CATTTGAAGACATCATGTGGTCTGTCTGCCTGACAACCACCTCAGCTTTGAAGTGGGCTCCATTGCAATGGAAGCATCGC
AAGTCGCCGATCTTGGAAAAGATCGGCACGCACTTGGATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis