Browse Element(s) Details


OsAffx.4249.1.S1_at

Description tigr:9633.m00366
TID=OsAffx.4249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0439011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein
LOC_Os05g04380Os.6592.1.S1_a_at11/115+1988177..1992981Peroxidase family protein, expressed
LOC_Os05g04390OsAffx.4249.1.S1_at11/115+2000170..2000905hypothetical protein
LOC_Os05g04400Os.20602.2.S1_x_at11/115+2001710..2003890hypothetical protein
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04440OsAffx.4250.1.S1_at11/115+2023022..2024479Peroxidase family protein, expressed
LOC_Os05g04440OsAffx.4250.1.S1_s_at11/115+2023022..2024479Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4249.1.S1_at--256--7071Chr05:2000678..2000702 (25 bp)
GTAAGTCTGGATGCAGTGCCCTTAT
LOC_Os05g04390
OsAffx.4249.1.S1_at--557--2311Chr05:2000621..2000645 (25 bp)
AAAGGAACTCGATTGCGCTGCAAGC
LOC_Os05g04390
OsAffx.4249.1.S1_at--481--5171Chr05:2000602..2000626 (25 bp)
GCAAGCATGGATTGTGTCTAGCACG
LOC_Os05g04390
OsAffx.4249.1.S1_at--1063--3471Chr05:2000547..2000571 (25 bp)
CAGGAGGTTCTTGGGCTGTCCATTA
LOC_Os05g04390
OsAffx.4249.1.S1_at--1129--6171Chr05:2000430..2000454 (25 bp)
GAGGACCAATGCAAGTTCGTTCAAT
LOC_Os05g04390
OsAffx.4249.1.S1_at--299--3231Chr05:2000419..2000443 (25 bp)
CAAGTTCGTTCAATGGGTGGATCCT
LOC_Os05g04390
OsAffx.4249.1.S1_at--924--2751Chr05:2000373..2000397 (25 bp)
AAGACACTAGCTGGCATGTGGGATA
LOC_Os05g04390
OsAffx.4249.1.S1_at--765--10391Chr05:2000293..2000317 (25 bp)
TTTTGCCCTGAAAGACCGTTTGGAG
LOC_Os05g04390
OsAffx.4249.1.S1_at--300--6071Chr05:2000253..2000277 (25 bp)
GAGTTAGCCCACAAGAATGCTCTGC
LOC_Os05g04390
OsAffx.4249.1.S1_at--453--5271Chr05:2000239..2000263 (25 bp)
GAATGCTCTGCTTGACATGAGGGAA
LOC_Os05g04390
OsAffx.4249.1.S1_at--411--2751Chr05:2000204..2000228 (25 bp)
AAGAACTGCTCTACAAATCTGCCTC
LOC_Os05g04390
Target Sequence 
GTAAGTCTGGATGCAGTGCCCTTATATTTGGAAGAAACAGAATGGCATGGTGAGGAGAAAGGAACTCGATTGCGCTGCAA
GCATGGATTGTGTCTAGCACGGAGGGTGGCTTGGGAAGGAGAAGACACAGGCAGGAGGTTCTTGGGCTGTCCATTAGAGG
AAGACGAGGACCAATGCAAGTTCGTTCAATGGGTGGATCCTGAATGGGACTCGAGGGTGAAGAAGACACTAGCTGGCATG
TGGGATATGGTGGACCGTGGAGTGAAACGTGAAGCAATTATTCAAGCTGACATGTTTAAGGCTTTTGCCCTGAAAGACCG
TTTGGAGAAAGAGAAGAATGATGAGTTAGCCCACAAGAATGCTCTGCTTGACATGAGGGAAGCACAATTGAAAGAACTGC
TCTACAAATCTGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis