Browse Element(s) Details


Os.6592.1.S1_a_at

Description gb:AK119205.1
DB_XREF= gi:37988828
TID=Os.6592.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-D11, full insert sequence.
FL= gb:AK119205.1 gb:AK122031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0438011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04350Os.46012.2.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.46012.3.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.27088.1.A1_x_at2/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.54691.1.S1_x_at1/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04360Os.9653.1.S1_s_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04360Os.9653.1.S1_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein
LOC_Os05g04380Os.6592.1.S1_a_at11/115+1988177..1992981Peroxidase family protein, expressed
LOC_Os05g04390OsAffx.4249.1.S1_at11/115+2000170..2000905hypothetical protein
LOC_Os05g04400Os.20602.2.S1_x_at11/115+2001710..2003890hypothetical protein
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed
LOC_Os05g04420NANA5+2010903..2016503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.1412.2.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04430OsAffx.30532.1.S1_at1/115+2017339..2021334retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6592.1.S1_a_at--517--2231Chr05:1992411..1992435 (25 bp)
ACAATGGCACGCTCTGGGACGAGGA
LOC_Os05g04380
Os.6592.1.S1_a_at--537--7631Chr05:1992426..1992450 (25 bp)
GGGACGAGGATTTCTCCGACGCGCT
LOC_Os05g04380
Os.6592.1.S1_a_at--732--10671Chr05:1992570..1992594 (25 bp)
TTCCATCTTGAGCTCTCATCTGCAT
LOC_Os05g04380
Os.6592.1.S1_a_at--337--10551Chr05:1992618..1992642 (25 bp)
TTCATTATTCGCATGGTTGGTTCAT
LOC_Os05g04380
Os.6592.1.S1_a_at--168--6531Chr05:1992681..1992705 (25 bp)
GATTTGTTGGTGCTCGTCGATCTCG
LOC_Os05g04380
Os.6592.1.S1_a_at--657--7211Chr05:1992696..1992720 (25 bp)
GTCGATCTCGTGTTGAATTGGTTTA
LOC_Os05g04380
Os.6592.1.S1_a_at--429--8671Chr05:1992725..1992749 (25 bp)
TGTGTTGAATTCTACGCGCATGTGT
LOC_Os05g04380
Os.6592.1.S1_a_at--351--7391Chr05:1992752..1992776 (25 bp)
GTGAGAACACCAGTACAGCGAGAAT
LOC_Os05g04380
Os.6592.1.S1_a_at--28--1571Chr05:1992791..1992815 (25 bp)
AGCTTTTGTGTTGTTGCATTCTCTG
LOC_Os05g04380
Os.6592.1.S1_a_at--412--4951Chr05:1992806..1992830 (25 bp)
GCATTCTCTGTCTATTGGTGTCAAA
LOC_Os05g04380
Os.6592.1.S1_a_at--685--9611Chr05:1992892..1992916 (25 bp)
TCATCCATCCAAAACTTTCTCCATT
LOC_Os05g04380
Target Sequence 
ACAATGGCACGCTCTGGGACGAGGATTTCTCCGACGCGCTCGTCAAGCTCAGCAAGCTGCCATTGCCGCCCAAGGCCAAG
GGCGAGATCCGCCGCCATTGCCGCCGCGTCAACACCCACCACTACTGATTCTTCATCCTCATCATCCCAACATCAAGCCT
TCCATCTTGAGCTCTCATCTGCATCCTCATTTTCAATAATTCTTTGTTTCATTATTCGCATGGTTGGTTCATCATCGTCG
TTTAATTTTGTGTANCTTGTTCTTTTTTTTNGATTTGTTGGTGCTCGTCGATCTCGTGTTGAATTGGTTTAATTTTGTGT
TGAATTCTACGCGCATGTGTATGTGAGAACACCAGTACAGCGAGAATTCATGGTGTATAGTAGCTTTTGTGTTGTTGCAT
TCTCTGTCTATTGGTGTCAAAAAGAAAGAAAGTTAATTAGTTGTTGTTTTTTTTTTTTNGGTATGGTTTGGATTGGATTT
GTATTCATCCATCCAAAACTTTCTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6592.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis