Browse Element(s) Details


Os.9837.1.S1_s_at

Description gb:AU173423
DB_XREF= gi:12623210
DB_XREF=AU173423
CLONE=R3030
TID=Os.9837.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.9837 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0437011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04330Os.35482.1.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.1.S1_s_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.2.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04340Os.5678.2.S1_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04340Os.5678.1.S1_x_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04350Os.46012.2.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.46012.3.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.27088.1.A1_x_at2/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.54691.1.S1_x_at1/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04360Os.9653.1.S1_s_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04360Os.9653.1.S1_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein
LOC_Os05g04380Os.6592.1.S1_a_at11/115+1988177..1992981Peroxidase family protein, expressed
LOC_Os05g04390OsAffx.4249.1.S1_at11/115+2000170..2000905hypothetical protein
LOC_Os05g04400Os.20602.2.S1_x_at11/115+2001710..2003890hypothetical protein
LOC_Os05g04410Os.11551.1.S1_at11/115+2005806..2008047Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9837.1.S1_s_at--1018--3791Chr05:1976789..1976813 (25 bp)
CTCCCTTTTGGAAGATCCACGCAGA
LOC_Os05g04370
Os.9837.1.S1_s_at--417--3611Chr05:1976663..1976687 (25 bp)
CTTGGCAGTCTATTCGGATATACTA
LOC_Os05g04370
Os.9837.1.S1_s_at--101--9571Chr05:1976625..1976649 (25 bp)
TCTTGCGTCTGGTTGTTTAGGTTTC
LOC_Os05g04370
Os.9837.1.S1_s_at--402--2431Chr05:1976586..1976610 (25 bp)
AAAATATCGGTTGCTCCCAGTTGCT
LOC_Os05g04370
Os.9837.1.S1_s_at--519--10151Chr05:1976556..1976580 (25 bp)
TATCCCCTTTGCATTGGCGTCAGAC
LOC_Os05g04370
Os.9837.1.S1_s_at--733--2551Chr05:1976460..1976484 (25 bp)
AACTGCCTCCAGAACAATTTGGTCC
LOC_Os05g04370
Os.9837.1.S1_s_at--238--8131Chr05:1976430..1976454 (25 bp)
GGACTTTTATCTCTCATTGCTAGCG
LOC_Os05g04370
Os.9837.1.S1_s_at--171--5211Chr05:1976398..1976422 (25 bp)
GAATTGTAGTGCATCTTTGGGTTTT
LOC_Os05g04370
Os.9837.1.S1_s_at--80--9551Chr05:1976364..1976388 (25 bp)
TCTTTTACCGGTGTGCAGTTTGTCA
LOC_Os05g04370
Os.9837.1.S1_s_at--1144--3431Chr05:1976349..1976373 (25 bp)
CAGTTTGTCAGGTTAGTACAGCCGA
LOC_Os05g04370
Os.9837.1.S1_s_at--845--5211Chr05:1976326..1976350 (25 bp)
GAATTTGACCAGCTAACAACCCACT
LOC_Os05g04370
Target Sequence 
CTCCCTTTTGGAAGATCCACGCAGAGCCAGGCATCCCTGCCAAGTTAAACCTCAAGCAACACAAGTATCTAAATACATGT
TTACACAGCGGAGTAAATAGAGAGAGGTTCTACATATCAGCGTCACTTGGCAGTCTATTCGGATATACTATCATAATGGT
GCCTCTTGCGTCTGGTTGTTTAGGTTTCGGAACACGTCTTGCAAAATATCGGTTGCTCCCAGTTGCTTCAACTATCCCCT
TTGCATTGGCGTCAGACGTACAAGCGGAGNNGGCNCTGATTCCTGTCATTNTCAGGAATTGTTAGCTTTAGTGAGGAGAG
CAAAAGATAACTGCCTCCAGAACAATTTGGTCCNCTATGGACTTTTATCTCTCATTGCTAGCGCANTTCAGAATTGTAGT
GCATCTTTGGGTTTTTTTTTTNACCTCTTTTACCGGTGTGCAGTTTGTCAGGTTAGTACAGCCGAATTTGACCAGCTAAC
AACCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9837.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis