Browse Element(s) Details


Os.5678.2.S1_at

Description gb:AK064884.1
DB_XREF= gi:32974902
TID=Os.5678.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5678 (NCBI UniGene Cluster)
UG_TITLE=MRNA, similar to protein kinase
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K07, full insert sequence.
FL= gb:AK064884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0434011/11Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04290Os.28943.1.S1_x_at4/115+1925157..1928383retrotransposon protein, putative, unclassified
LOC_Os05g04300NANA5+1929004..1932476retrotransposon protein, putative, unclassified
LOC_Os05g04310NANA5+1935381..1935698hypothetical protein
LOC_Os05g04320NANA5+1936783..1938945retrotransposon protein, putative, unclassified
LOC_Os05g04330Os.35482.1.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.1.S1_s_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.2.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04340Os.5678.2.S1_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04340Os.5678.1.S1_x_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04350Os.46012.2.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.46012.3.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.27088.1.A1_x_at2/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.54691.1.S1_x_at1/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04360Os.9653.1.S1_s_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04360Os.9653.1.S1_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009933biological_processmeristem organization
GO:0016310biological_processphosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5678.2.S1_at--132--3591Chr05:1952767..1952791 (25 bp)
CATTTCTTTATTTGCCATTACAGTC
LOC_Os05g04340
Os.5678.2.S1_at--104--191Chr05:1952766..1952790 (25 bp)
ATTTCTTTATTTGCCATTACAGTCG
LOC_Os05g04340
Os.5678.2.S1_at--135--10331Chr05:1952765..1952789 (25 bp)
TTTCTTTATTTGCCATTACAGTCGG
LOC_Os05g04340
Os.5678.2.S1_at--1136--10551Chr05:1952764..1952788 (25 bp)
TTCTTTATTTGCCATTACAGTCGGA
LOC_Os05g04340
Os.5678.2.S1_at--904--9551Chr05:1952763..1952787 (25 bp)
TCTTTATTTGCCATTACAGTCGGAA
LOC_Os05g04340
Os.5678.2.S1_at--282--3671Chr05:1952762..1952786 (25 bp)
CTTTATTTGCCATTACAGTCGGAAG
LOC_Os05g04340
Os.5678.2.S1_at--361--10351Chr05:1952761..1952785 (25 bp)
TTTATTTGCCATTACAGTCGGAAGC
LOC_Os05g04340
Os.5678.2.S1_at--375--10411Chr05:1952760..1952784 (25 bp)
TTATTTGCCATTACAGTCGGAAGCA
LOC_Os05g04340
Os.5678.2.S1_at--344--10191Chr05:1952759..1952783 (25 bp)
TATTTGCCATTACAGTCGGAAGCAT
LOC_Os05g04340
Os.5678.2.S1_at--1066--191Chr05:1952758..1952782 (25 bp)
ATTTGCCATTACAGTCGGAAGCATT
LOC_Os05g04340
Os.5678.2.S1_at--257--10291Chr05:1952757..1952781 (25 bp)
TTTGCCATTACAGTCGGAAGCATTG
LOC_Os05g04340
Target Sequence 
CATTTCTTTATTTGCCATTACAGTCGGAAGCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5678.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis