Browse Element(s) Details


Os.35482.1.S1_s_at

Description gb:AK063482.1
DB_XREF= gi:32973500
TID=Os.35482.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B11, full insert sequence.
FL= gb:AK063482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0433011/11DNA methyltransferase DMT106, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04260OsAffx.27864.4.S1_x_at11/115+1917381..1920071AT hook motif-containing protein, putative
LOC_Os05g04270NANA5+1921542..1921805hypothetical protein
LOC_Os05g04280Os.10731.1.A1_a_at11/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.38764.1.S1_x_at8/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04280Os.47130.4.A1_x_at3/115+1923491..1924217retrotransposon protein, putative, unclassified
LOC_Os05g04290Os.28943.1.S1_x_at4/115+1925157..1928383retrotransposon protein, putative, unclassified
LOC_Os05g04300NANA5+1929004..1932476retrotransposon protein, putative, unclassified
LOC_Os05g04310NANA5+1935381..1935698hypothetical protein
LOC_Os05g04320NANA5+1936783..1938945retrotransposon protein, putative, unclassified
LOC_Os05g04330Os.35482.1.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.1.S1_s_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.2.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04340Os.5678.2.S1_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04340Os.5678.1.S1_x_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04350Os.46012.2.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.46012.3.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.27088.1.A1_x_at2/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.54691.1.S1_x_at1/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04360Os.9653.1.S1_s_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04360Os.9653.1.S1_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0005634cellular_componentnucleus
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008170molecular_functionN-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35482.1.S1_s_at--409--7551Chr05:1951123..1951147 (25 bp)
GGGCTAAGGGTGCTATCAATCTACA
LOC_Os05g04330
Os.35482.1.S1_s_at--524--9531Chr05:1951142..1951166 (25 bp)
TCTACAGTGGAATTGGAGGTGCAGC
LOC_Os05g04330
Os.35482.1.S1_s_at--71--3151Chr05:1951167..1951191 (25 bp)
AATTGCCCTCCATCGCCTAGGGATA
LOC_Os05g04330
Os.35482.1.S1_s_at--588--9331Chr05:1951179..1951203 (25 bp)
TCGCCTAGGGATACCACTACAGTGT
LOC_Os05g04330
Os.35482.1.S1_s_at--201--1111Chr05:1951199..1951223 (25 bp)
AGTGTGTAGTATCTGTTGACCAATC
LOC_Os05g04330
Os.35482.1.S1_s_at--1011--471Chr05:1951209..1951233 (25 bp)
ATCTGTTGACCAATCTGATACGAAC
LOC_Os05g04330
Os.35482.1.S1_s_at--748--5531Chr05:1951373..1951397 (25 bp)
GAAACTTCAGTTCCTGTAAAGGTGG
LOC_Os05g04330
Os.35482.1.S1_s_at--849--2131Chr05:1951402..1951426 (25 bp)
ACAGTAAACTCATCCATGGGCATGG
LOC_Os05g04330
Os.35482.1.S1_s_at--803--791Chr05:1951417..1951441 (25 bp)
ATGGGCATGGATTCCAACCAGTTTT
LOC_Os05g04330
Os.35482.1.S1_s_at--100--11Chr05:1951433..1951457 (25 bp)
ACCAGTTTTTTGAGTATGTTCGTGT
LOC_Os05g04330
Os.35482.1.S1_s_at--157--5391Chr05:1951470..1951494 (25 bp)
GAAGCATATAATGGGTCGGCTCCAG
LOC_Os05g04330
Target Sequence 
GGGCTAAGGGTGCTATCAATCTACAGTGGAATTGGAGGTGCAGCAATTGCCCTCCATCGCCTAGGGATACCACTACAGTG
TGTAGTATCTGTTGACCAATCTGATACGAACAGGAAAATTTTGAGAAGGTGGTGGAGTAATACTGAACAAAAGGGGCAAC
TGAGGCAGATAAATACCATTTGGAAGCTGAAGATTAATGTACTTGAGGACCTGGTGAAAGAATTTGGTGGTTTTGACATA
ATTATTGGTGGAAACTTCAGTTCCTGTAAAGGTGGTACAACAGTAAACTCATCCATGGGCATGGATTCCAACCAGTTTTT
TGAGTATGTTCGTGTTGTTCAAAGAGTGAAGCATATAATGGGTCGGCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35482.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis