Browse Element(s) Details


Os.9653.1.S1_at

Description gb:AK067074.1
DB_XREF= gi:32977092
TID=Os.9653.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093M04, full insert sequence.
FL= gb:AK067074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0436011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04330Os.35482.1.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.1.S1_s_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.2.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04340Os.5678.2.S1_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04340Os.5678.1.S1_x_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04350Os.46012.2.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.46012.3.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.27088.1.A1_x_at2/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.54691.1.S1_x_at1/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04360Os.9653.1.S1_s_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04360Os.9653.1.S1_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein
LOC_Os05g04380Os.6592.1.S1_a_at11/115+1988177..1992981Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9653.1.S1_at--867--6051Chr05:1974332..1974356 (25 bp)
GAGTTCCTCATCATGGGGTGCGACG
LOC_Os05g04360
Os.9653.1.S1_at--601--7951Chr05:1974357..1974381 (25 bp)
GGATCTGGGACGTGATGACCAGCCA
LOC_Os05g04360
Os.9653.1.S1_at--1046--3891Chr05:1974361..1974385 (25 bp)
CTGGGACGTGATGACCAGCCAGCAC
LOC_Os05g04360
Os.9653.1.S1_at--1036--8251Chr05:1974414..1974438 (25 bp)
GGCAGCACGACGACCCCGAGAGGTG
LOC_Os05g04360
Os.9653.1.S1_at--142--991Chr05:1974575..1974599 (25 bp)
AGGAGTTGCAAGAGCCTCTCTGCGG
LOC_Os05g04360
Os.9653.1.S1_at--597--2771Chr05:1974584..1974608 (25 bp)
AAGAGCCTCTCTGCGGAGGCCCTGT
LOC_Os05g04360
Os.9653.1.S1_at--219--4171Chr05:1974651..1974675 (25 bp)
CGCCGGTGTTTGGTTGTGGCCACTT
LOC_Os05g04360
Os.9653.1.S1_at--818--7431Chr05:1974656..1974680 (25 bp)
GTGTTTGGTTGTGGCCACTTCACAC
LOC_Os05g04360
Os.9653.1.S1_at--269--10871Chr05:1974660..1974684 (25 bp)
TTGGTTGTGGCCACTTCACACTTGT
LOC_Os05g04360
Os.9653.1.S1_at--859--7551Chr05:1974666..1974690 (25 bp)
GTGGCCACTTCACACTTGTGTACAT
LOC_Os05g04360
Os.9653.1.S1_at--1152--9691Chr05:1974675..1974699 (25 bp)
TCACACTTGTGTACATATGCTGACA
LOC_Os05g04360
Target Sequence 
GAGTTCCTCATCATGGGGTGCGACGGGATCTGGGACGTGATGACCAGCCAGCACGCGGTGANNNNNGTCCGNCNGGGGCT
CCGGCAGCACGACGACCCCGAGAGGTGCGCGAGGGAGCTTGTCATGGAGGCCAAGAGGCTCGAGACCGCCGACAACCTGA
CGGTGATCGTCGTCTGCTTCGTCTCGGAGCTTGGGTCGCCGCGGCAGGAGCAGGTGGGGGGGCAGNCGGGGGTGGCGAGG
CCGAGGAGTTGCAAGAGCCTCTCTGCGGAGGCCCTGTGCAACCTGAGGAGCTGGCTGGAGACTGATCGCTAGGGCGAGGC
GCCGGTGTTTGGTTGTGGCCACTTCACACTTGTGTACATATGCTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis