Browse Element(s) Details


Os.9653.1.S1_s_at

Description gb:AK067074.1
DB_XREF= gi:32977092
TID=Os.9653.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093M04, full insert sequence.
FL= gb:AK067074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0436011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04330Os.35482.1.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.1.S1_s_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04330Os.35482.2.S1_at11/115+1943620..1952894DNA methyltransferase DMT106, putative, expressed
LOC_Os05g04340Os.5678.2.S1_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04340Os.5678.1.S1_x_at11/115+1952052..1955861Glycogen synthase kinase-3 homolog MsK-3, putative, expressed
LOC_Os05g04350Os.46012.2.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.46012.3.S1_x_at7/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.27088.1.A1_x_at2/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04350Os.54691.1.S1_x_at1/115+1961409..1966184retrotransposon protein, putative, unclassified
LOC_Os05g04360Os.9653.1.S1_s_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04360Os.9653.1.S1_at11/115+1972268..1974927Protein phosphatase 2C containing protein, expressed
LOC_Os05g04370OsAffx.14539.1.S1_at11/115+1976238..1980811expressed protein
LOC_Os05g04370Os.9837.1.S1_s_at11/115+1976238..1980811expressed protein
LOC_Os05g04380Os.6592.1.S1_a_at11/115+1988177..1992981Peroxidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9653.1.S1_s_at--43--6231Chr05:1974599..1974623 (25 bp)
GAGGCCCTGTGCAACCTGAGGAGCT
LOC_Os05g04360
Os.9653.1.S1_s_at--979--3911Chr05:1974622..1974646 (25 bp)
CTGGCTGGAGACTGATCGCTAGGGC
LOC_Os05g04360
Os.9653.1.S1_s_at--924--4751Chr05:1974693..1974717 (25 bp)
GCTGACATTAGTTGTTTTTTGTTCT
LOC_Os05g04360
Os.9653.1.S1_s_at--730--9571Chr05:1974715..1974739 (25 bp)
TCTTCTGATTTGTTGAGAGGCTGCT
LOC_Os05g04360
Os.9653.1.S1_s_at--597--3371Chr05:1974762..1974786 (25 bp)
CAGCCGGCAGTTTTGTAGGCCATTT
LOC_Os05g04360
Os.9653.1.S1_s_at--941--10291Chr05:1974789..1974813 (25 bp)
TTTCCTCGTTATTATTTTTCTGCGT
LOC_Os05g04360
Os.9653.1.S1_s_at--699--10311Chr05:1974805..1974829 (25 bp)
TTTCTGCGTTTTGTTGACATGTTAC
LOC_Os05g04360
Os.9653.1.S1_s_at--295--5671Chr05:1974820..1974844 (25 bp)
GACATGTTACTGCTATTGTTCACAC
LOC_Os05g04360
Os.9653.1.S1_s_at--1036--9071Chr05:1974830..1974854 (25 bp)
TGCTATTGTTCACACCATTGCTGTT
LOC_Os05g04360
Os.9653.1.S1_s_at--823--71Chr05:1974846..1974870 (25 bp)
ATTGCTGTTGTACATATCTCTGTTG
LOC_Os05g04360
Os.9653.1.S1_s_at--109--471Chr05:1974861..1974885 (25 bp)
ATCTCTGTTGAGTTCATGTATGGAT
LOC_Os05g04360
Target Sequence 
GAGGCCCTGTGCAACCTGAGGAGCTGGCTGGAGACTGATCGCTAGGGCGAGGCGCCGGTGTTTGGTTGTGGCCACTTCAC
ACTTGTGTACATATGCTGACATTAGTTGTTTTTTGTTCTTCTGATTTGTTGAGAGGCTGCTGAGGTGGAGCAGGGAGGGT
GAGCAGCCGGCAGTTTTGTAGGCCATTTTTTTTCCTCGTTATTATTTTTCTGCGTTTTGTTGACATGTTACTGCTATTGT
TCACACCATTGCTGTTGTACATATCTCTGTTGAGTTCATGTATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9653.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis