Browse Element(s) Details


OsAffx.4259.1.S1_at

Description tigr:9633.m00528
TID=OsAffx.4259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g060809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06019OsAffx.4416.1.S1_at2/115+2995876..2996421retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06028OsAffx.4416.1.S1_at2/115+3001526..3002071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g06040NANA5+3004717..3005136hypothetical protein
LOC_Os05g06050NANA5+3008942..3011231Core-2/I-Branching enzyme family protein
LOC_Os05g06060OsAffx.14566.2.S1_at11/115+3014115..3015245hypothetical protein
LOC_Os05g06070OsAffx.14566.1.S1_at11/115+3016670..3017698seven in absentia, putative
LOC_Os05g06080OsAffx.4259.1.S1_at9/115+3020176..3021214hypothetical protein
LOC_Os05g06080OsAffx.14566.1.S1_at1/115+3020176..3021214hypothetical protein
LOC_Os05g06090OsAffx.22217.1.S1_x_at1/115+3022404..3022981hypothetical protein
LOC_Os05g06100NANA5+3023940..3025073seven in absentia, putative
LOC_Os05g06110Os.5079.1.S1_at11/115+3028794..3035004Villin-1, putative, expressed
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4259.1.S1_at--28--6171Chr05:3020215..3020239 (25 bp)
GAGGAAGAAAGCCAACGTGAAACTG
LOC_Os05g06080
OsAffx.4259.1.S1_at--313--2751Chr05:3020219..3020243 (25 bp)
AAGAAAGCCAACGTGAAACTGCTGT
LOC_Os05g06080
OsAffx.4259.1.S1_at--1123--5531Chr05:3020221..3020245 (25 bp)
GAAAGCCAACGTGAAACTGCTGTTG
LOC_Os05g06080
OsAffx.4259.1.S1_at--518--2791Chr05:3020258..3020282 (25 bp)
AAGAGGAAAGCACCGGCGTGCATGT
LOC_Os05g06080
OsAffx.4259.1.S1_at--1023--9391Chr05:3020329..3020353 (25 bp)
TCGTCGAGACGAGCGTTCGTCACGG
LOC_Os05g06080
OsAffx.4259.1.S1_at--57--7211Chr05:3020331..3020355 (25 bp)
GTCGAGACGAGCGTTCGTCACGGTC
LOC_Os05g06080
OsAffx.4259.1.S1_at--75--4071Chr05:3020333..3020357 (25 bp)
CGAGACGAGCGTTCGTCACGGTCGC
LOC_Os05g06080
OsAffx.4259.1.S1_at--444--5771Chr05:3020336..3020360 (25 bp)
GACGAGCGTTCGTCACGGTCGCCGA
LOC_Os05g06080
OsAffx.4259.1.S1_at--1002--4071Chr05:3020338..3020362 (25 bp)
CGAGCGTTCGTCACGGTCGCCGACG
LOC_Os05g06080
OsAffx.4259.1.S1_at--963--2211NONE
ACAAGCTGGCGGAGTCCATGTGTGA
NONE
OsAffx.4259.1.S1_at--202--3251NONE
CAAGCTGGCGGAGTCCATGTGTGAA
NONE
Target Sequence 
GAGGAAGAAAGCCAACGTGAAACTGCTGTTGTTGAGGAGGAGGAAGAGGAAAGCACCGGCGTGCATGTCGGGGAGGCAGA
GATGGCTGCCTCCGAGGAGCAGGCGCCGCCGTCGTCGTCGAGACGAGCGTTCGTCACGGTCGCCGACGCCGACGCGCTCG
AGTGCGGCGTGTGCCGCCTCCCGCTGAGGCCTCCCGTCTTCCAGTGCGAGGACGGGCACGTCGTGTGCTCGCCGTGCCGC
GACAAGCTGGCGGAGTCCATGTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis