Browse Element(s) Details


OsAffx.4313.1.S1_at

Description tigr:9633.m01095
TID=OsAffx.4313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1228011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12260Os.5395.1.S1_at11/115+7013604..7015898CAPIP1, putative, expressed
LOC_Os05g12270OsAffx.26853.1.S1_at11/115+7019000..7019674hypothetical protein
LOC_Os05g12280OsAffx.4313.1.S1_at11/115+7029284..7030166expressed protein
LOC_Os05g12290OsAffx.10048.1.S1_x_at1/115+7035179..7039333retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g12300Os.26561.1.S1_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_x_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.26561.1.S2_at11/115+7041323..7045443expressed protein
LOC_Os05g12300Os.27790.2.A1_x_at4/115+7041323..7045443expressed protein
LOC_Os05g12300OsAffx.4936.1.S1_at1/115+7041323..7045443expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4313.1.S1_at--222--6331Chr05:7029845..7029869 (25 bp)
GATGCTGAGCATCACCGAGGTATAG
LOC_Os05g12280
OsAffx.4313.1.S1_at--635--3551Chr05:7029836..7029860 (25 bp)
CATCACCGAGGTATAGAGATCAAGA
LOC_Os05g12280
OsAffx.4313.1.S1_at--119--7411Chr05:7029784..7029808 (25 bp)
GTGATTGGGACTCTGTTGATGACTC
LOC_Os05g12280
OsAffx.4313.1.S1_at--209--5711Chr05:7029776..7029800 (25 bp)
GACTCTGTTGATGACTCCGATTCGG
LOC_Os05g12280
OsAffx.4313.1.S1_at--739--1991Chr05:7029763..7029787 (25 bp)
ACTCCGATTCGGACCACGATTCAGA
LOC_Os05g12280
OsAffx.4313.1.S1_at--493--10611Chr05:7029756..7029780 (25 bp)
TTCGGACCACGATTCAGACTCTGAT
LOC_Os05g12280
OsAffx.4313.1.S1_at--162--6571Chr05:7029746..7029770 (25 bp)
GATTCAGACTCTGATCATGATCATG
LOC_Os05g12280
OsAffx.4313.1.S1_at--1089--6433Chr07:5053065..5053084 (20 bp)
GATCATGATCATGACTCGGACTCAG
NONE
OsAffx.4313.1.S1_at--917--5711Chr05:7029722..7029746 (25 bp)
GACTCGGACTCAGATCATGATTCGG
LOC_Os05g12280
OsAffx.4313.1.S1_at--250--8131Chr05:7029717..7029741 (25 bp)
GGACTCAGATCATGATTCGGACTTT
LOC_Os05g12280
OsAffx.4313.1.S1_at--334--111Chr05:7029703..7029727 (25 bp)
ATTCGGACTTTGATCGCGGCTCAGA
LOC_Os05g12280
Target Sequence 
GATGCTGAGCATCACCGAGGTATAGAGATCAAGAAATTAGATAATGATGACGATGATGGCAGTGATTGGGACTCTGTTGA
TGACTCCGATTCGGACCACGATTCAGACTCTGATCATGATCATGACTCGGACTCAGATCATGATTCGGACTTTGATCGCG
GCTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis