Browse Element(s) Details


OsAffx.4344.1.S1_at

Description tigr:9633.m01342
TID=OsAffx.4344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1526011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15210NANA5+8609337..8611693retrotransposon protein, putative, unclassified
LOC_Os05g15220NANA5+8612544..8617644retrotransposon protein, putative, unclassified, expressed
LOC_Os05g15230Os.54939.1.S1_at11/115+8619474..8621547expressed protein
LOC_Os05g15240OsAffx.21066.1.S1_x_at3/115+8623190..8626815expressed protein
LOC_Os05g15240Os.27004.1.A1_at2/115+8623190..8626815expressed protein
LOC_Os05g15240OsAffx.9772.1.S1_at1/115+8623190..8626815expressed protein
LOC_Os05g15250OsAffx.19542.3.S1_x_at3/115+8628495..8632701retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15260OsAffx.4344.1.S1_at11/115+8634354..8635570hypothetical protein
LOC_Os05g15270Os.36426.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15270OsAffx.199.1.S1_at1/115+8635965..8642312retrotransposon protein, putative, unclassified
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4344.1.S1_at--239--2651Chr05:8635021..8635045 (25 bp)
AACCACACTTAAGGATATAGCTCAT
LOC_Os05g15260
OsAffx.4344.1.S1_at--1024--291Chr05:8635037..8635061 (25 bp)
ATAGCTCATCAGCTTGAAAGTTCTT
LOC_Os05g15260
OsAffx.4344.1.S1_at--541--9551Chr05:8635058..8635082 (25 bp)
TCTTTGGATGCTCTAGTTGCGGACT
LOC_Os05g15260
OsAffx.4344.1.S1_at--488--3711Chr05:8635070..8635094 (25 bp)
CTAGTTGCGGACTGTGGTCTAATCA
LOC_Os05g15260
OsAffx.4344.1.S1_at--564--3031Chr05:8635215..8635239 (25 bp)
AATCCAATCGGCAATCCATTATTGA
LOC_Os05g15260
OsAffx.4344.1.S1_at--890--3131Chr05:8635318..8635342 (25 bp)
AATTGAATTGCTGGCTGAACTTGAA
LOC_Os05g15260
OsAffx.4344.1.S1_at--1145--4991Chr05:8635343..8635367 (25 bp)
GCATGTAATGCTGAACTAGCTTTAG
LOC_Os05g15260
OsAffx.4344.1.S1_at--538--2331Chr05:8635410..8635434 (25 bp)
AAAAACCCAAGCTGAAGTCTTCAAT
LOC_Os05g15260
OsAffx.4344.1.S1_at--1057--7132Chr05:8635426..8635450 (25 bp)
GTCTTCAATCAAGCACTTAGCCGAA
LOC_Os05g15260
OsAffx.4344.1.S1_at--724--351Chr05:8635455..8635479 (25 bp)
ATAAGACTGTGAAACCGATCCCAAG
LOC_Os05g15260
OsAffx.4344.1.S1_at--119--2371Chr05:8635466..8635490 (25 bp)
AAACCGATCCCAAGCACAGATGCAG
LOC_Os05g15260
Target Sequence 
AACCACACTTAAGGATATAGCTCATCAGCTTGAAAGTTCTTTGGATGCTCTAGTTGCGGACTGTGGTCTAATCAGGGCAA
GGTTTGAGATCATCTCTCCAGCAGTCTTCCTTGAGCAATATCGGCACAAACTGGAGAGAGCAAGACAAAGGATAGCCGAT
AGGAGGGAAAGAAAAGATCTTGAAGCCACCATTCAATCCAATCGGCAATCCATTATTGAAGAAAAAGCTAAGCTTGATGC
AATGATCTCTGGACCCAATCCTATCCAATCTAACATAGATCGGCTGAAAAACAGAAAAATTGAATTGCTGGCTGAACTTG
AAGCATGTAATGCTGAACTAGCTTTAGAAGAACATAAGCTTGCCGATCTGCCAAGAGCCATCGAAGAACAAAAACCCAAG
CTGAAGTCTTCAATCAAGCACTTAGCCGAACTAAATAAGACTGTGAAACCGATCCCAAGCACAGATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis