Browse Element(s) Details


OsAffx.4397.1.S1_at

Description tigr:9633.m02007
TID=OsAffx.4397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2278011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22740OsAffx.15207.1.S1_at11/115+12821691..12822482hypothetical protein
LOC_Os05g22750OsAffx.18275.1.S1_x_at2/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22750OsAffx.26607.2.S1_at1/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22760NANA5+12833017..12835427hypothetical protein
LOC_Os05g22770OsAffx.8429.1.S1_at1/115+12836559..12841388retrotransposon protein, putative, unclassified
LOC_Os05g22780OsAffx.4397.1.S1_at11/115+12844942..12845341hypothetical protein
LOC_Os05g22790OsAffx.26972.1.S1_at11/115+12848694..12849089hypothetical protein
LOC_Os05g22800Os.53433.1.S1_at11/115+12855388..12860663Pectate lyase precursor, putative, expressed
LOC_Os05g22810NANA5+12868084..12872505retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4397.1.S1_at--488--8031Chr05:12845048..12845072 (25 bp)
GGAGTTCACCTTCGTCAAGTAGCTT
LOC_Os05g22780
OsAffx.4397.1.S1_at--43--9392Chr05:12845059..12845083 (25 bp)
TCGTCAAGTAGCTTCTATCCCAAAG
LOC_Os05g22780
OsAffx.4397.1.S1_at--429--5371Chr05:12845108..12845132 (25 bp)
GAAGACGACCAAGGGCTCCGGAGCC
LOC_Os05g22780
OsAffx.4397.1.S1_at--891--9271Chr05:12845124..12845148 (25 bp)
TCCGGAGCCCATTAGGCCTCCAAAG
LOC_Os05g22780
OsAffx.4397.1.S1_at--418--9211Chr05:12845142..12845166 (25 bp)
TCCAAAGGCCATCAAGCCTCCGGAA
LOC_Os05g22780
OsAffx.4397.1.S1_at--225--9711Chr05:12845153..12845177 (25 bp)
TCAAGCCTCCGGAACCGACCAAGGG
LOC_Os05g22780
OsAffx.4397.1.S1_at--92--5911Chr05:12845183..12845207 (25 bp)
GAGCTCGTCATACCTCATGAGCCGA
LOC_Os05g22780
OsAffx.4397.1.S1_at--712--9591Chr05:12845190..12845214 (25 bp)
TCATACCTCATGAGCCGACCAAGGG
LOC_Os05g22780
OsAffx.4397.1.S1_at--599--5851Chr05:12845206..12845230 (25 bp)
GACCAAGGGCTCGAAGCCCGTCAGG
LOC_Os05g22780
OsAffx.4397.1.S1_at--1161--3191Chr05:12845245..12845269 (25 bp)
CAAGTCCTTGGAGCCTATCATGTCT
LOC_Os05g22780
OsAffx.4397.1.S1_at--257--10171Chr05:12845260..12845284 (25 bp)
TATCATGTCTCCAGAGGCCACTCGG
LOC_Os05g22780
Target Sequence 
GGAGTTCACCTTCGTCAAGTAGCTTCTATCCCAAAGCTACCCCACCCTGGGAAAACGACCGAAGACGACCAAGGGCTCCG
GAGCCCATTAGGCCTCCAAAGGCCATCAAGCCTCCGGAACCGACCAAGGGCTCCGGAGCTCGTCATACCTCATGAGCCGA
CCAAGGGCTCGAAGCCCGTCAGGCCTCCGGAGCCCATCAAGTCCTTGGAGCCTATCATGTCTCCAGAGGCCACTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis