Browse Element(s) Details


OsAffx.4420.1.S1_at

Description tigr:9633.m02241
TID=OsAffx.4420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2498010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24950Os.46995.1.S1_x_at1/115+14358552..14361480retrotransposon protein, putative, unclassified
LOC_Os05g24960NANA5+14362435..14364929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24970Os.12155.1.S1_at11/115+14371563..14374099Small nuclear ribonucleoprotein Sm D2, putative, expressed
LOC_Os05g24980OsAffx.4420.1.S1_at10/115+14381067..14382221hypothetical protein
LOC_Os05g24990OsAffx.27005.1.S1_at11/115+14382551..14386008transposon protein, putative, Mutator sub-class
LOC_Os05g24990OsAffx.23660.1.S1_at1/115+14382551..14386008transposon protein, putative, Mutator sub-class
LOC_Os05g25000NANA5+14389780..14391056hypothetical protein
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.1.S1_s_at9/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.7.S1_s_at8/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.2.S1_x_at6/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25020OsAffx.25936.5.S1_x_at2/115+14405762..14408800transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4420.1.S1_at--584--311Chr05:14381333..14381357 (25 bp)
ATACCAGTTGCAAGAGCTGTGGCAG
LOC_Os05g24980
OsAffx.4420.1.S1_at--982--7972Chr05:14381406..14381430 (25 bp)
GGATCCAGCTTCTTGTGTTGATGAA
LOC_Os05g24980
OsAffx.4420.1.S1_at--772--2951Chr05:14381439..14381459 (21 bp)
AAGGCCTACTAGTGCTGTTTGTGTT
LOC_Os05g24980
OsAffx.4420.1.S1_at--41--10251NONE
TTTGTGTTTAAACCTGTGGGCATGC
NONE
OsAffx.4420.1.S1_at--26--7491Chr05:14381685..14381969 (25 bp)
GTGGGCATGCACATGGCTGCATACA
LOC_Os05g24980
OsAffx.4420.1.S1_at--665--8331Chr05:14381959..14381983 (25 bp)
GGCTGCATACAGTTTGCCAACCAAA
LOC_Os05g24980
OsAffx.4420.1.S1_at--1023--1471Chr05:14382032..14382056 (25 bp)
AGCACATTTTCAGTTTCTTGGCTTT
LOC_Os05g24980
OsAffx.4420.1.S1_at--216--4731Chr05:14382109..14382133 (25 bp)
GCTGGGATCTAGCACCTGGATTCAG
LOC_Os05g24980
OsAffx.4420.1.S1_at--256--1771Chr05:14382122..14382146 (25 bp)
ACCTGGATTCAGTGGTGCCTTCCTT
LOC_Os05g24980
OsAffx.4420.1.S1_at--206--10651Chr05:14382141..14382165 (25 bp)
TTCCTTGGTGACCTCCTACTTAGTC
LOC_Os05g24980
OsAffx.4420.1.S1_at--194--9891Chr05:14382157..14382181 (25 bp)
TACTTAGTCCTGCAACTGGAGCTGG
LOC_Os05g24980
Target Sequence 
ATACCAGTTGCAAGAGCTGTGGCAGGTGAAGGTGACATGGTTGATGAAGGCAAGATGGATAAGCTAACTAAGTGGATCCA
GCTTCTTGTGTTGATGAACATAGGGCAAGGCCTACTAGTGCTGTTTGTGTTTAAACCTGTGGGCATGCACATGGCTGCAT
ACAGTTTGCCAACCAAATCAGTTCACATAGCTGTAGAAAAGCTAGATCCAAAAGCTACTAGATCAAGCACATTTTCAGTT
TCTTGGCTTTTTCTTGGGTGCTGGGATCTAGCACCTGGATTCAGTGGTGCCTTCCTTGGTGACCTCCTACTTAGTCCTGC
AACTGGAGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis