Browse Element(s) Details


OsAffx.4422.1.S1_at

Description tigr:9633.m02253
TID=OsAffx.4422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2509011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25060OsAffx.14819.1.S1_at11/115+14422340..14428742expressed protein
LOC_Os05g25070Os.8036.1.S1_at4/115+14432264..14436147expressed protein
LOC_Os05g25070OsAffx.15286.1.S1_at2/115+14432264..14436147expressed protein
LOC_Os05g25080Os.27034.1.A1_at8/115+14442907..14446172transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g25090OsAffx.4422.1.S1_at11/115+14446088..14447149hypothetical protein
LOC_Os05g25100OsAffx.31813.1.S1_x_at2/115+14457242..14465185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25100Os.51869.1.S1_at2/115+14457242..14465185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g25110NANA5+14466583..14470785retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4422.1.S1_at--241--4991Chr05:14446846..14447113 (25 bp)
GCATGCCGAGCTCAGATTTGTTTTC
LOC_Os05g25090
OsAffx.4422.1.S1_at--1109--10492Chr07:14799539..14799563 (25 bp)
TTCAAGGGATTGACTCTTTCACTTC
NONE
OsAffx.4422.1.S1_at--582--1612Chr09:10057828..10057847 (20 bp)
AGCTGTTGCTTGATTTGAGGAATGC
NONE
OsAffx.4422.1.S1_at--1105--3012Chr07:14799687..14799711 (25 bp)
AATGCTGTGTGGTCTGCACGTGAGC
NONE
OsAffx.4422.1.S1_at--75--4771Chr05:14446663..14446687 (25 bp)
GCTGCACTTCGGGACAGGACAGTAG
LOC_Os05g25090
OsAffx.4422.1.S1_at--672--6972Chr07:14799750..14799774 (25 bp)
GTAGCCCAGCACAACTTGCAGTCTA
NONE
OsAffx.4422.1.S1_at--401--10511Chr05:14446593..14446617 (25 bp)
TTCAGGGTCTGAGAGCTGCTGTAGA
LOC_Os05g25090
OsAffx.4422.1.S1_at--246--2491Chr05:14446336..14446545 (25 bp)
AACAGACATCTGTTCTACTAGAATT
LOC_Os05g25090
OsAffx.4422.1.S1_at--1156--1672Chr07:14800177..14800201 (25 bp)
AGCCATATTGGGTGACTGGGAATCA
NONE
OsAffx.4422.1.S1_at--435--3012Chr07:14800254..14800278 (25 bp)
AATGACATATATTGCCACATCTGGA
NONE
OsAffx.4422.1.S1_at--972--9452Chr07:14800273..14800297 (25 bp)
TCTGGAACCCATTGTATCTGATTAC
NONE
Target Sequence 
GCATGCCGAGCTCAGATTTGTTTTCAAGGGATTGACTCTTTCACTTCCCCTTTTTTTGTGAAGTCTGGGGGCTGCGGATT
TTGGGAGTGGTGTGATGATAAGGCAGAACCATATATGAAGCAGCTGTTGCTTGATTTGAGGAATGCTGTGTGGTCTGCAC
GTGAGCAAGTGAATGGCCTGGAGGCTGCACTTCGGGACAGGACAGTAGCCCAGCACAACTTGCAGTCTACCCCCAAGAAA
GAAAGCAATGAGGTTCAGGGTCTGAGAGCTGCTGTAGAGAAGATGGAAGCTGCAAATTGTGTTTTAGTTGATAGGATTAA
CAAACAACAGACATCTGTTCTACTAGAATTTGTAATTGCAAATTGGAATGAATGCAAAATTGTGGTTTTGTTTGAGATGA
CAGTTAAAAATCAGCCATATTGGGTGACTGGGAATCAAGGCATGTTATGGCAGTTGGAGATAATGGAAACAGCAAAAGTG
ATGATAAATAATGACATATATTGCCACATCTGGAACCCATTGTATCTGATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis