Browse Element(s) Details


OsAffx.4438.1.S1_at

Description tigr:9633.m02431
TID=OsAffx.4438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2685010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26830OsAffx.27029.1.S1_at11/115+15483805..15484017hypothetical protein
LOC_Os05g26840Os.17793.1.S1_at11/115+15496167..15498004xanthine/uracil permease family protein, expressed
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein
LOC_Os05g26860OsAffx.27030.1.S1_at11/115+15509826..15512408hypothetical protein
LOC_Os05g26870Os.55476.1.S1_at11/115+15512863..15513786expressed protein
LOC_Os05g26880OsAffx.4439.1.S1_at11/115+15523704..15525324hypothetical protein
LOC_Os05g26890Os.5302.1.S1_a_at11/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26890Os.14876.1.S1_at6/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4438.1.S1_at--957--8631Chr05:15509010..15509034 (25 bp)
TGGGCAGCGTATCCATCCACATGCT
LOC_Os05g26850
OsAffx.4438.1.S1_at--1104--571Chr05:15508996..15509020 (25 bp)
ATCCACATGCTTGCGGCTCGAGGCG
LOC_Os05g26850
OsAffx.4438.1.S1_at--423--8011NONE
GGAGGCGGTGGATCAGTATTATATA
NONE
OsAffx.4438.1.S1_at--116--6952Chr03:26500068..26500121 (25 bp)
GTAGATTGTTGATTGCATCTCTTTT
NONE
OsAffx.4438.1.S1_at--890--6631Chr05:15507664..15507688 (25 bp)
GTTGATTGCATCTCTTTTTGGAAAA
LOC_Os05g26850
OsAffx.4438.1.S1_at--626--4971Chr05:15507657..15507681 (25 bp)
GCATCTCTTTTTGGAAAACATGTAG
LOC_Os05g26850
OsAffx.4438.1.S1_at--804--631Chr05:15507623..15507647 (25 bp)
ATGCTTCTAAATTGCTTTCTTCCCC
LOC_Os05g26850
OsAffx.4438.1.S1_at--225--9851Chr05:15507616..15507640 (25 bp)
TAAATTGCTTTCTTCCCCGGTTATG
LOC_Os05g26850
OsAffx.4438.1.S1_at--228--10551Chr05:15507607..15507631 (25 bp)
TTCTTCCCCGGTTATGGTAGACGAG
LOC_Os05g26850
OsAffx.4438.1.S1_at--280--7891Chr05:15507598..15507622 (25 bp)
GGTTATGGTAGACGAGCACACTCAA
LOC_Os05g26850
OsAffx.4438.1.S1_at--912--811Chr05:15507594..15507618 (25 bp)
ATGGTAGACGAGCACACTCAAGAAC
LOC_Os05g26850
Target Sequence 
TGGGCAGCGTATCCATCCACATGCTTGCGGCTCGAGGCGCGGGAGGCGGTGGATCAGTATTATATAGTAGATTGTTGATT
GCATCTCTTTTTGGAAAACATGTAGCAAAGAAGAATGCTTCTAAATTGCTTTCTTCCCCGGTTATGGTAGACGAGCACAC
TCAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis