Browse Element(s) Details


OsAffx.27029.1.S1_at

Description tigr:9633.m02429
TID=OsAffx.27029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26780NANA5+15457106..15458983transposon protein, putative, unclassified
LOC_Os05g26790NANA5+15460403..15461682retrotransposon protein, putative, unclassified
LOC_Os05g26800OsAffx.23442.1.S1_at1/115+15462640..15463935retrotransposon protein, putative, unclassified
LOC_Os05g26810OsAffx.22945.1.S1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.49936.2.A1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.27691.1.S1_x_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.52311.1.S1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26820Os.49675.1.S1_at11/115+15477975..15482323CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g26830OsAffx.27029.1.S1_at11/115+15483805..15484017hypothetical protein
LOC_Os05g26840Os.17793.1.S1_at11/115+15496167..15498004xanthine/uracil permease family protein, expressed
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27029.1.S1_at--1037--6291Chr05:15483961..15483985 (25 bp)
GATGATGTGGCCCTTGCAGAACCAT
LOC_Os05g26830
OsAffx.27029.1.S1_at--516--8411Chr05:15483953..15483977 (25 bp)
GGCCCTTGCAGAACCATGTTATGTT
LOC_Os05g26830
OsAffx.27029.1.S1_at--619--3411Chr05:15483945..15483969 (25 bp)
CAGAACCATGTTATGTTGATGATCA
LOC_Os05g26830
OsAffx.27029.1.S1_at--815--6291Chr05:15483928..15483952 (25 bp)
GATGATCAATGCAATGCCAATCAAA
LOC_Os05g26830
OsAffx.27029.1.S1_at--348--9011Chr05:15483919..15483943 (25 bp)
TGCAATGCCAATCAAAGTAGCTTTT
LOC_Os05g26830
OsAffx.27029.1.S1_at--482--1191Chr05:15483904..15483928 (25 bp)
AGTAGCTTTTGCAAACGATGGAGAA
LOC_Os05g26830
OsAffx.27029.1.S1_at--49--8551Chr05:15483886..15483910 (25 bp)
TGGAGAAAGTGACCTCCATTTTCTT
LOC_Os05g26830
OsAffx.27029.1.S1_at--328--1751Chr05:15483875..15483899 (25 bp)
ACCTCCATTTTCTTGACCATTGGTG
LOC_Os05g26830
OsAffx.27029.1.S1_at--925--5831Chr05:15483861..15483885 (25 bp)
GACCATTGGTGGGTTTTGGACCAGA
LOC_Os05g26830
OsAffx.27029.1.S1_at--703--6711Chr05:15483849..15483873 (25 bp)
GTTTTGGACCAGAGGCTCAAGGCCA
LOC_Os05g26830
OsAffx.27029.1.S1_at--331--1731Chr05:15483842..15483866 (25 bp)
ACCAGAGGCTCAAGGCCAATCTCAA
LOC_Os05g26830
Target Sequence 
GATGATGTGGCCCTTGCAGAACCATGTTATGTTGATGATCAATGCAATGCCAATCAAAGTAGCTTTTGCAAACGATGGAG
AAAGTGACCTCCATTTTCTTGACCATTGGTGGGTTTTGGACCAGAGGCTCAAGGCCAATCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis