Browse Element(s) Details


Os.49675.1.S1_at

Description gb:AK101355.1
DB_XREF= gi:32986564
TID=Os.49675.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034P20, full insert sequence.
FL= gb:AK101355.1 gb:AK058763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2682011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26780NANA5+15457106..15458983transposon protein, putative, unclassified
LOC_Os05g26790NANA5+15460403..15461682retrotransposon protein, putative, unclassified
LOC_Os05g26800OsAffx.23442.1.S1_at1/115+15462640..15463935retrotransposon protein, putative, unclassified
LOC_Os05g26810OsAffx.22945.1.S1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.49936.2.A1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.27691.1.S1_x_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26810Os.52311.1.S1_at1/115+15469658..15476277retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g26820Os.49675.1.S1_at11/115+15477975..15482323CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g26830OsAffx.27029.1.S1_at11/115+15483805..15484017hypothetical protein
LOC_Os05g26840Os.17793.1.S1_at11/115+15496167..15498004xanthine/uracil permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49675.1.S1_at--696--151Chr05:15481732..15481756 (25 bp)
ATTATTTCTCTTTCGGAAGGCTTTG
LOC_Os05g26820
Os.49675.1.S1_at--640--5291Chr05:15481747..15481771 (25 bp)
GAAGGCTTTGATCTTTCTGGCTTGT
LOC_Os05g26820
Os.49675.1.S1_at--290--6171Chr05:15481846..15481870 (25 bp)
GAGGATGTTGCCTCATGTTCGAAGT
LOC_Os05g26820
Os.49675.1.S1_at--89--5051Chr05:15481951..15481975 (25 bp)
GCAGAGATCTTCGAGGTGACTCCTT
LOC_Os05g26820
Os.49675.1.S1_at--113--7771Chr05:15481965..15481989 (25 bp)
GGTGACTCCTTCATTTCATTTGGTA
LOC_Os05g26820
Os.49675.1.S1_at--874--8951Chr05:15482048..15482072 (25 bp)
TGAAACCAGCTCTTAAGGACATTGT
LOC_Os05g26820
Os.49675.1.S1_at--1133--5151Chr05:15482103..15482127 (25 bp)
GCAACCTGAAGATCATGGCCAGCCA
LOC_Os05g26820
Os.49675.1.S1_at--271--871Chr05:15482117..15482141 (25 bp)
ATGGCCAGCCATAGAATTGTTTCAA
LOC_Os05g26820
Os.49675.1.S1_at--642--2931Chr05:15482168..15482192 (25 bp)
AAGGCACTGCTTATCCTTTTGCTTA
LOC_Os05g26820
Os.49675.1.S1_at--67--171Chr05:15482192..15482216 (25 bp)
ATTATTCGTTCTATCTTCTGTCTTC
LOC_Os05g26820
Os.49675.1.S1_at--805--431Chr05:15482204..15482228 (25 bp)
ATCTTCTGTCTTCCCAAAATCCATA
LOC_Os05g26820
Target Sequence 
ATTATTTCTCTTTCGGAAGGCTTTGATCTTTCTGGCTTGTTTGAGGAGACTGATAAAAAGAAAGAAGCAAGGTTTACATC
AAGTCAATCAGCTTCAGCTATTATCTCAAAACTAGAGGATGTTGCCTCATGTTCGAAGTTGACAGTGAAAAAGAAAGAAG
GTGGTGTGCTGAAAATGGAAGGTGCAAGTGAAGGAAGGAAAGGTGTATTGGCAATCGATGCAGAGATCTTCGAGGTGACT
CCTTCATTTCATTTGGTAGAAATCAAGAAGAACAATGGAGATACACTAGAATACCAACATTTGTGGAAGGAGGACATGAA
ACCAGCTCTTAAGGACATTGTTTGGGCTTGGCAAGGTGAACGCCAGGATCAGCAACCTGAAGATCATGGCCAGCCATAGA
ATTGTTTCAATGTCGAAATGTTTCGTTGCCTTAGGAAAGGCACTGCTTATCCTTTTGCTTATTATTCGTTCTATCTTCTG
TCTTCCCAAAATCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis