Browse Element(s) Details


OsAffx.4443.1.S1_at

Description tigr:9633.m02505
TID=OsAffx.4443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2755011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27520OsAffx.14851.1.S1_at11/115+15929458..15932338expressed protein
LOC_Os05g27520Os.14876.1.S1_at5/115+15929458..15932338expressed protein
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative
LOC_Os05g27550OsAffx.4443.1.S1_at11/115+15950224..15951362F-box domain containing protein
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27570OsAffx.27044.1.S1_at11/115+15966889..15968454Protein of unknown function, DUF614 containing protein
LOC_Os05g27580OsAffx.14853.1.S1_at11/115+15969031..15972672Wound-induced protein WI12 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4443.1.S1_at--368--9451Chr05:15950794..15950818 (25 bp)
TCGGCGTTCTCGTGCTCATCGGAGA
LOC_Os05g27550
OsAffx.4443.1.S1_at--364--9371Chr05:15950855..15950879 (25 bp)
TCGACCGCGAGTACCTCTACAGAAG
LOC_Os05g27550
OsAffx.4443.1.S1_at--1063--4371Chr05:15950953..15950977 (25 bp)
CCAAGCTGGAGCTGTCGGCGATCGA
LOC_Os05g27550
OsAffx.4443.1.S1_at--502--10631Chr05:15951112..15951136 (25 bp)
TTCGCCGGAGGGTGGTCGACCTCTT
LOC_Os05g27550
OsAffx.4443.1.S1_at--822--3051Chr05:15951174..15951198 (25 bp)
AATCTGACCGGCTTCGACGAGGGCA
LOC_Os05g27550
OsAffx.4443.1.S1_at--837--711Chr05:15951204..15951228 (25 bp)
ATGATCTTCTTCCAAGCGAGCGACG
LOC_Os05g27550
OsAffx.4443.1.S1_at--319--8391Chr05:15951228..15951252 (25 bp)
GGCGACTACGCCATAGATGAGCTCA
LOC_Os05g27550
OsAffx.4443.1.S1_at--1141--10031Chr05:15951241..15951265 (25 bp)
TAGATGAGCTCATGTCGTCACCACG
LOC_Os05g27550
OsAffx.4443.1.S1_at--906--8711Chr05:15951253..15951277 (25 bp)
TGTCGTCACCACGTGCCAAGAAGCT
LOC_Os05g27550
OsAffx.4443.1.S1_at--804--5611Chr05:15951288..15951312 (25 bp)
GACAACTTTTCTAATGTCTTCCCCT
LOC_Os05g27550
OsAffx.4443.1.S1_at--82--9771Chr05:15951299..15951323 (25 bp)
TAATGTCTTCCCCTACAGAAGCTTC
LOC_Os05g27550
Target Sequence 
TCGGCGTTCTCGTGCTCATCGGAGACCCGGGGAGTGGAGCAGCGCGCCCTCCACCGTACACCTCGACCGCGAGTACCTCT
ACAGAAGCCCAACGTCCTCGCCGGCGGCGCCGTCCACTTCCTCACCGACTACGGCAGGACCGTCCTCCGCTACGACCTCG
CCAAGCTGGAGCTGTCGGCGATCGAGCCGCCGGAGGTGCACTCCGACGTGCTCCTCACGACGACGGAGGGCGGCGACCTG
GGGCTGGCCATCCTGGACGACCAGCGCTACCTCCGCCTCTGGGCGTGGGCCGCAGACCATGGCGTCACGCGGCGGTGGGT
TCGCCGGAGGGTGGTCGACCTCTTCGCCGAGCTCCCGTTCCTCCAGCACGTACTCCCGCTGAATCTGACCGGCTTCGACG
AGGGCACCGGCATGATCTTCTTCCAAGCGAGCGACGGCGACTACGCCATAGATGAGCTCATGTCGTCACCACGTGCCAAG
AAGCTTTGGGGGAGGGACAACTTTTCTAATGTCTTCCCCTACAGAAGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis