Browse Element(s) Details


OsAffx.4456.1.S1_at

Description tigr:9633.m02593
TID=OsAffx.4456.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g283502/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein
LOC_Os05g28320OsAffx.4454.1.S1_at11/115+16504231..16505142Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g28330OsAffx.4455.1.S1_at9/115+16506391..16509122hypothetical protein
LOC_Os05g28340NANA5+16512960..16515729retrotransposon protein, putative, unclassified
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein
LOC_Os05g28360OsAffx.27058.1.S1_at11/115+16538799..16539239hypothetical protein
LOC_Os05g28370Os.47889.1.S1_at11/115+16544210..16547643expressed protein
LOC_Os05g28380OsAffx.27059.1.S1_at10/115+16548308..16549641hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009744biological_processresponse to sucrose stimulus
GO:0009747biological_processhexokinase-dependent signaling
GO:0009749biological_processresponse to glucose stimulus
GO:0010182biological_processsugar mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4456.1.S1_at--993--7911Chr05:16525605..16525629 (25 bp)
GGTTGTTGTCCACTATATCTTCAGG
NONE
OsAffx.4456.1.S1_at--480--6651Chr05:16525604..16525628 (25 bp)
GTTGTTGTCCACTATATCTTCAGGT
NONE
OsAffx.4456.1.S1_at--9--10191Chr05:16525592..16525616 (25 bp)
TATATCTTCAGGTCTCGGACGGGCA
NONE
OsAffx.4456.1.S1_at--449--251Chr05:16525591..16525615 (25 bp)
ATATCTTCAGGTCTCGGACGGGCAT
NONE
OsAffx.4456.1.S1_at--6--10151Chr05:16525590..16525614 (25 bp)
TATCTTCAGGTCTCGGACGGGCATA
NONE
OsAffx.4456.1.S1_at--978--431Chr05:16525589..16525613 (25 bp)
ATCTTCAGGTCTCGGACGGGCATAC
NONE
OsAffx.4456.1.S1_at--429--10531Chr05:16525586..16525610 (25 bp)
TTCAGGTCTCGGACGGGCATACCCA
NONE
OsAffx.4456.1.S1_at--609--9391Chr05:16525582..16525602 (21 bp)
TCGGACGGGCATACCCACGGGCCGT
NONE
OsAffx.4456.1.S1_at--903--5751NONE
GACGGGCATACCCACGGGCCGTGGT
NONE
OsAffx.4456.1.S1_at--864--1831Chr05:16522893..16522917 (25 bp)
ACGCGGCGGCGCTACTGTGGAGCGA
LOC_Os05g28350
OsAffx.4456.1.S1_at--612--8351Chr05:16522889..16522913 (25 bp)
GGCGGCGCTACTGTGGAGCGAGCCG
LOC_Os05g28350
Target Sequence 
GGTTGTTGTCCACTATATCTTCAGGTCTCGGACGGGCATACCCACGGGCCGTGGTGGCGACGGCGCCAGAGGACGCCGCG
TCAGCGGCGGCGGCGGCGGCGGCGGAGGAGGAGGCCGCGTGGGGCTTCCACGGCGGCGACGAGGAGGACTACGCGGCGGC
GCTACTGTGGAGCGAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis