Browse Element(s) Details


OsAffx.27058.1.S1_at

Description tigr:9633.m02594
TID=OsAffx.27058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2836011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28340NANA5+16512960..16515729retrotransposon protein, putative, unclassified
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein
LOC_Os05g28360OsAffx.27058.1.S1_at11/115+16538799..16539239hypothetical protein
LOC_Os05g28370Os.47889.1.S1_at11/115+16544210..16547643expressed protein
LOC_Os05g28380OsAffx.27059.1.S1_at10/115+16548308..16549641hypothetical protein
LOC_Os05g28390NANA5+16554656..16555354hypothetical protein
LOC_Os05g28404OsAffx.27060.1.S1_at11/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_x_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27058.1.S1_at--105--6091Chr05:16538855..16538879 (25 bp)
GAGTAGAAGCTCTCACACGGAACTT
LOC_Os05g28360
OsAffx.27058.1.S1_at--192--5411Chr05:16538860..16538884 (25 bp)
GAAGCTCTCACACGGAACTTCGCAT
LOC_Os05g28360
OsAffx.27058.1.S1_at--253--2951Chr05:16538891..16538915 (25 bp)
AAGGCGGCGCCATTCCCGGCATCGG
LOC_Os05g28360
OsAffx.27058.1.S1_at--607--8271Chr05:16538914..16538938 (25 bp)
GGCATCGGCTTGTTGCCATCCACGA
LOC_Os05g28360
OsAffx.27058.1.S1_at--631--4971Chr05:16539008..16539032 (25 bp)
GCATGCAGTTGTCTACCTCGCCCAA
LOC_Os05g28360
OsAffx.27058.1.S1_at--483--3791Chr05:16539044..16539068 (25 bp)
CTCGTCTGTCGTCGGCAGCTGTCCG
LOC_Os05g28360
OsAffx.27058.1.S1_at--98--3831Chr05:16539108..16539132 (25 bp)
CTGCCTTTGCCCCTAATAGATTGGA
LOC_Os05g28360
OsAffx.27058.1.S1_at--603--9151Chr05:16539115..16539139 (25 bp)
TGCCCCTAATAGATTGGACGTCGAC
LOC_Os05g28360
OsAffx.27058.1.S1_at--279--6611Chr05:16539126..16539150 (25 bp)
GATTGGACGTCGACGCATTGTCATC
LOC_Os05g28360
OsAffx.27058.1.S1_at--689--4931Chr05:16539140..16539164 (25 bp)
GCATTGTCATCCTCGTCATCTAGCT
LOC_Os05g28360
OsAffx.27058.1.S1_at--14--7131Chr05:16539154..16539178 (25 bp)
GTCATCTAGCTACCTCCGCCATTAT
LOC_Os05g28360
Target Sequence 
GAGTAGAAGCTCTCACACGGAACTTCGCATCCCTCCAAGGCGGCGCCATTCCCGGCATCGGCATCGGCTTGTTGCCATCC
ACGACTCCGCCTTCGTCCCCAACCCCCTTCCAGCTACTTCAGCCTTCCCTAGCTACCTTTACCCCCGCCCTCCGCATGCA
GTTGTCTACCTCGCCCAACTGCCACTGCCCTCGTCTGTCGTCGGCAGCTGTCCGCCCTTCTCAGCTGCCTTTGCCCCTAC
CCACCGCCCCCCGCTGCCTTTGCCCCTAATAGATTGGACGTCGACGCATTGTCATCCTCGTCATCTAGCTACCTCCGCCA
TTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis