Browse Element(s) Details


Os.47889.1.S1_at

Description gb:AK108857.1
DB_XREF= gi:32994066
TID=Os.47889.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B03, full insert sequence.
FL= gb:AK108857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2837011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein
LOC_Os05g28360OsAffx.27058.1.S1_at11/115+16538799..16539239hypothetical protein
LOC_Os05g28370Os.47889.1.S1_at11/115+16544210..16547643expressed protein
LOC_Os05g28380OsAffx.27059.1.S1_at10/115+16548308..16549641hypothetical protein
LOC_Os05g28390NANA5+16554656..16555354hypothetical protein
LOC_Os05g28404OsAffx.27060.1.S1_at11/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_x_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47889.1.S1_at--865--6971Chr05:16544725..16544749 (25 bp)
GTACCGCTGGACGAACTAGGAACAA
LOC_Os05g28370
Os.47889.1.S1_at--379--531Chr05:16544654..16544678 (25 bp)
ATCGCTAACAGAGCAAGCCTTCCTA
LOC_Os05g28370
Os.47889.1.S1_at--837--2651Chr05:16544640..16544664 (25 bp)
AAGCCTTCCTAACGGTGTCACTGAT
LOC_Os05g28370
Os.47889.1.S1_at--475--3191Chr05:16544583..16544607 (25 bp)
CAATCACATATTGCCGGAGCCCTGA
LOC_Os05g28370
Os.47889.1.S1_at--516--8911Chr05:16544561..16544585 (25 bp)
TGAGCACCTGACTGTAACACCGTGT
LOC_Os05g28370
Os.47889.1.S1_at--251--311Chr05:16544519..16544543 (25 bp)
ATACCAGTGTTTGGGCACCATGGCC
LOC_Os05g28370
Os.47889.1.S1_at--1037--7791Chr05:16544494..16544518 (25 bp)
GGTCTGCAACACATTCCTTGGTAAA
LOC_Os05g28370
Os.47889.1.S1_at--196--2571Chr05:16544470..16544494 (25 bp)
AACTGGTGCTTGTCAGTCACCTTTG
LOC_Os05g28370
Os.47889.1.S1_at--358--1171Chr05:16544456..16544480 (25 bp)
AGTCACCTTTGTAGCTGGAGTTCTC
LOC_Os05g28370
Os.47889.1.S1_at--575--2391Chr05:16544362..16544386 (25 bp)
AAACTCTTCATTCCGGTGACTGGCA
LOC_Os05g28370
Os.47889.1.S1_at--371--8111Chr05:16544264..16544288 (25 bp)
GGACTTCCCCGTTCGAATTAGATGA
LOC_Os05g28370
Target Sequence 
GTACCGCTGGACGAACTAGGAACAACAATGNTAGCGCGGCTTCTTCATACTCCCCGTATTCCAGCCCAGCTATCGCTAAC
AGAGCAAGCCTTCCTAACGGTGTCACTGATGGCAGTGCCAGTGTCACAGGAGAGGATCACAGCAATCACATATTGCCGGA
GCCCTGAGCACCTGACTGTAACACCGTGTTTCAGCCACCNTACCAAATACCAGTGTTTGGGCACCATGGCCGGTCTGCAA
CACATTCCTTGGTAAAACTGGTGCTTGTCAGTCACCTTTGTAGCTGGAGTTCTCTATAAATTATGGTAAGAAAAACTGCC
GTTTTTTAATCGATGGATTTTCNCCACTTTGTACAGAGCCGACAAACTCTTCATTCCGGTGACTGGCAGCAGTAGNCATG
AGTATACCGGCAACATATAAAGGAGGCATGAGTAACCATGAGTAAACCTGCAACATATAAAGGACTTCCCCGTTCGAATT
AGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis