Browse Element(s) Details


OsAffx.4457.1.S1_at

Description tigr:9633.m02600
TID=OsAffx.4457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2844011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28370Os.47889.1.S1_at11/115+16544210..16547643expressed protein
LOC_Os05g28380OsAffx.27059.1.S1_at10/115+16548308..16549641hypothetical protein
LOC_Os05g28390NANA5+16554656..16555354hypothetical protein
LOC_Os05g28404OsAffx.27060.1.S1_at11/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_x_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28404OsAffx.2412.1.S1_at2/115+16557247..16557693hypothetical protein
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein
LOC_Os05g28450NANA5+16578296..16578727hypothetical protein
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein
LOC_Os05g28470OsAffx.27062.1.S1_at11/115+16584115..16590366hypothetical protein
LOC_Os05g28470Os.22914.1.A1_at10/115+16584115..16590366hypothetical protein
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4457.1.S1_at--402--10071Chr05:16570182..16570206 (25 bp)
TAGTGCTATGTCCAACATTGCGCCC
LOC_Os05g28440
OsAffx.4457.1.S1_at--395--7231Chr05:16570157..16570181 (25 bp)
GTCGCACCTACTCGTATTACTAGAT
LOC_Os05g28440
OsAffx.4457.1.S1_at--71--8331Chr05:16570089..16570113 (25 bp)
GGCTGCTTTACCTATTCCTTCACAA
LOC_Os05g28440
OsAffx.4457.1.S1_at--563--1931Chr05:16570038..16570062 (25 bp)
ACGGCAACGTCGTACATTTTGGACA
LOC_Os05g28440
OsAffx.4457.1.S1_at--121--6651Chr05:16569956..16569980 (25 bp)
GTTGTTTGCCCTGCTTGCACAGAAA
LOC_Os05g28440
OsAffx.4457.1.S1_at--552--5851Chr05:16569907..16569931 (25 bp)
GACCAAGGAATACATCTCTCTACTG
LOC_Os05g28440
OsAffx.4457.1.S1_at--605--3171Chr05:16569874..16569898 (25 bp)
AATTGGAGTCTAGTTCGTCTGTTGC
LOC_Os05g28440
OsAffx.4457.1.S1_at--86--1231Chr05:16569863..16569887 (25 bp)
AGTTCGTCTGTTGCGGCTAATTCCT
LOC_Os05g28440
OsAffx.4457.1.S1_at--248--9751Chr05:16569846..16569870 (25 bp)
TAATTCCTCCTTGCAGTCTACTGCT
LOC_Os05g28440
OsAffx.4457.1.S1_at--249--1991Chr05:16569827..16569851 (25 bp)
ACTGCTGTAACTCCTATTGCTGATG
LOC_Os05g28440
OsAffx.4457.1.S1_at--1006--1251Chr05:16569751..16569775 (25 bp)
AGATTAGTGAGGCATTCCCTAAGCC
LOC_Os05g28440
Target Sequence 
TAGTGCTATGTCCAACATTGCGCCCGTCGCACCTACTCGTATTACTAGATATGATAAGGATGACAAGCATAAACCAGTTA
TAGTTTGTGCTCTGGCTGCTTTACCTATTCCTTCACAACCACCTAAGGCTTCACAAGAACGTAAACGGCAACGTCGTACA
TTTTGGACAAAATGTGCAACCTGCAAGGAGAAGAACAAATTCCCCATAACAAATCTTGCATGTCAAGTTGTTTGCCCTGC
TTGCACAGAAACATTCACAGCAATTGAGGTAGCTAGACCAAGGAATACATCTCTCTACTGTAAAGAAAAATTGGAGTCTA
GTTCGTCTGTTGCGGCTAATTCCTCCTTGCAGTCTACTGCTGTAACTCCTATTGCTGATGTGGCCTATCACCCTTCCAAT
ATACAAGGGAAGCGTAAAGATGGAGAAGTGAAGATTAGTGAGGCATTCCCTAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis