Browse Element(s) Details


Os.22914.1.A1_at

Description gb:CA759249
DB_XREF= gi:25803288
DB_XREF=BR060009B20C02.ab1
CLONE=BR060009B20C02.ab1
TID=Os.22914.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22914 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2847010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28420Os.26886.1.S1_x_at6/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420Os.26886.3.S1_x_at5/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28420OsAffx.16244.1.S1_x_at1/115+16559599..16562632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein
LOC_Os05g28450NANA5+16578296..16578727hypothetical protein
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein
LOC_Os05g28470OsAffx.27062.1.S1_at11/115+16584115..16590366hypothetical protein
LOC_Os05g28470Os.22914.1.A1_at10/115+16584115..16590366hypothetical protein
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22914.1.A1_at--438--9951Chr05:16585678..16585702 (25 bp)
TACGCCACTAGGGAATTGTGCATTA
LOC_Os05g28470
Os.22914.1.A1_at--445--8031Chr05:16585794..16585818 (25 bp)
GGAGGGAATCATCTGGTAGTCTAAT
LOC_Os05g28470
Os.22914.1.A1_at--589--7851Chr05:16585808..16585832 (25 bp)
GGTAGTCTAATTTATGTTGCACATG
LOC_Os05g28470
Os.22914.1.A1_at--104--6551Chr05:16585835..16585859 (25 bp)
GATTATTACATATTGCTACGTCCTT
LOC_Os05g28470
Os.22914.1.A1_at--581--4851Chr05:16585849..16585873 (25 bp)
GCTACGTCCTTTTGCAAAGCTTGCA
LOC_Os05g28470
Os.22914.1.A1_at--734--8071Chr05:16585953..16585977 (25 bp)
GGAGCTTGAATACCTTACAGAACCT
LOC_Os05g28470
Os.22914.1.A1_at--662--6311Chr05:16585994..16586018 (25 bp)
GATGACGAAAGACCTGTATCAGATT
LOC_Os05g28470
Os.22914.1.A1_at--848--6451Chr05:16586027..16586051 (25 bp)
GATCAACTGTTATATTGTGCCAATG
LOC_Os05g28470
Os.22914.1.A1_at--948--4711Chr05:16586104..16586128 (25 bp)
GCTGGCACTACTGTTACTTCCATTA
LOC_Os05g28470
Os.22914.1.A1_at--278--6531Chr05:16586130..16586154 (25 bp)
GATTTGTCATGCTCTTTTGTACGCT
LOC_Os05g28470
Os.22914.1.A1_at--673--2231NONE
ACAATGACGCTGTCTTGTGCTCCGT
NONE
Target Sequence 
TACGCCACTAGGGAATTGTGCATTACAAAGCATTAAGTCAAAAATGGAAGAAAATGGATTCTGTTATGTATCTCCAAGGA
ANCGGCTGGTTTCAGATGGTTATNTTCTATATACTAGGAGGGAATCATCTGGTAGTCTAATTTATGTTGCACATGCTGAT
TATTACATATTGCTACGTCCTTTTGCAAAGCTTGCAGAAGTTGATGTTAGAGTTTTGCNCAGTAGTGTGTTAAAACTNNN
NNNNANNNNNNGCTGGATAGAAGAAAGAGTAGGAAGGAGCTTGAATACCTTACAGAACCTCCNTGATGAANCAAGTGATG
ACGAAAGACCTGTATCAGATTGAANCTTTGATCAACTGTTATATTGTGCCAATGTTGTAAGNANNNATCACTTTTTTGNT
TCCTCGANNTAACTTGGTCAAGTANAANGCTGGCACTACTGTTACTTCCATTANGATTTGTCATGCTCTTTTGTACGCTA
AGGTACCTTTANGCCTGTCACAATGACGCTGTCTTGTGCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22914.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis