Browse Element(s) Details


Os.25494.1.S1_at

Description gb:AK071056.1
DB_XREF= gi:32981079
TID=Os.25494.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075K24, full insert sequence.
FL= gb:AK071056.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g284806/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28430Os.26886.6.S1_s_at9/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430OsAffx.16467.1.S1_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28430Os.26886.2.S1_s_at7/115+16564521..16567614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28440OsAffx.4457.1.S1_at11/115+16569663..16571723hypothetical protein
LOC_Os05g28450NANA5+16578296..16578727hypothetical protein
LOC_Os05g28460OsAffx.27061.1.S1_at11/115+16581844..16583357expressed protein
LOC_Os05g28470OsAffx.27062.1.S1_at11/115+16584115..16590366hypothetical protein
LOC_Os05g28470Os.22914.1.A1_at10/115+16584115..16590366hypothetical protein
LOC_Os05g28480Os.25494.1.S1_at6/115+16591887..16594358hypothetical protein
LOC_Os05g28490OsAffx.28933.1.S1_x_at5/115+16599513..16600388hypothetical protein
LOC_Os05g28490OsAffx.28933.2.S1_x_at1/115+16599513..16600388hypothetical protein
LOC_Os05g28500Os.14274.1.S1_at9/115+16606063..16610081ubiquitin family protein, putative, expressed
LOC_Os05g28510Os.3381.1.S1_a_at11/115+16615815..16620585Importin-beta N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25494.1.S1_at--597--7231NONE
GTCGCTCGCCGAATAAGATAATACA
NONE
Os.25494.1.S1_at--779--871Chr05:16594334..16594358 (25 bp)
ATGGCCGCGCACAACACATCTATGA
LOC_Os05g28480
Os.25494.1.S1_at--453--2731Chr05:16593611..16593635 (25 bp)
AAGCAAGCCGCTGCAGATGTCCTTT
LOC_Os05g28480
Os.25494.1.S1_at--14--7271Chr05:16593593..16593617 (25 bp)
GTCCTTTTCCACTATTCACAGTTTA
LOC_Os05g28480
Os.25494.1.S1_at--849--7411Chr05:16593547..16593571 (25 bp)
GTGTTCGCCCAACTGATCTGAGGTT
LOC_Os05g28480
Os.25494.1.S1_at--278--2831Chr05:16591960..16591984 (25 bp)
AAGTTTCAGGAATGGCCACTTCTCT
LOC_Os05g28480
Os.25494.1.S1_at--599--4451Chr05:16591910..16591934 (25 bp)
GCCTCTCCGGATTCTAGTGAACCAT
LOC_Os05g28480
Os.25494.1.S1_at--31--711Chr05:16591855..16591879 (25 bp)
ATGAGATCTTCTAAGCTTCTTCAAG
NONE
Os.25494.1.S1_at--235--1191Chr05:16591804..16591828 (25 bp)
AGTAGGTTCACAGCTTGTGGTCTGA
NONE
Os.25494.1.S1_at--1107--311Chr05:16591682..16591706 (25 bp)
ATACTTTAGTATGTTTGGCCCACAA
NONE
Os.25494.1.S1_at--239--2431Chr05:16591620..16591644 (25 bp)
AAAATTCTTGAAGTGCCTAGCCCGC
NONE
Target Sequence 
GTCGCTCGCCGAATAAGATAATACATAAAGAATGGCCGCGCACAACACATCTATGACATGTGAGGGTGACTATGAGACTG
AACAGAAAAAGCAAGCCGCTGCAGATGTCCTTTTCCACTATTCACAGTTTATTATGGTTTGCATTGGTGNAGGGTGTTCG
CCCAACTGATCTGAGGTTGCATCTTATGAAGGAAGTTTCAGGAATGGCCACTTCTCTAACGAAAGAGCCACAGCAAGCAG
CTGCCTCTCCGGATTCTAGTGAACCATCTTCTTCAGGGACAACGAAATGAGACACGAATGAGATCTTCTAAGCTTCTTCA
AGAAGTATGATAGGAAATATTGCAANCTAGTAGGTTCACAGCTTGTGGTCTGAGAACTGTTTCTGGTGCAGTGATAGGAA
GTATTGATGATGATATACTTGTGNTGGTGATGCTTCTTATGAGCACTTGATTTGAATAAATTAAATGTAAATACTTTAGT
ATGTTTGGCCCACAATTTGTAATGAAGGAACATGGATCGTGATNTTTCTGATAAAATTCTTGAAGTGCCTAGCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis