Browse Element(s) Details


OsAffx.4467.1.S1_at

Description tigr:9633.m02662
TID=OsAffx.4467.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2904011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed
LOC_Os05g29040OsAffx.4467.1.S1_at11/115+16946972..16947567hypothetical protein
LOC_Os05g29050OsAffx.14869.1.S1_at11/115+16970907..16981612Phospholipase D p1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4467.1.S1_at--528--6771Chr05:16947014..16947038 (25 bp)
GTTATGATGTTTTCGCTGGTGGGCC
LOC_Os05g29040
OsAffx.4467.1.S1_at--552--731Chr05:16947020..16947044 (25 bp)
ATGTTTTCGCTGGTGGGCCATGTAG
LOC_Os05g29040
OsAffx.4467.1.S1_at--1075--8431Chr05:16947035..16947202 (25 bp)
GGCCATGTAGGCAACGTGACTTCGG
LOC_Os05g29040
OsAffx.4467.1.S1_at--477--3511Chr05:16947038..16947205 (25 bp)
CATGTAGGCAACGTGACTTCGGGTG
LOC_Os05g29040
OsAffx.4467.1.S1_at--430--7571Chr05:16947208..16947232 (25 bp)
GGGCGGCTTGGGAGCACGCGTGACA
LOC_Os05g29040
OsAffx.4467.1.S1_at--7--1511Chr05:16947220..16947244 (25 bp)
AGCACGCGTGACAGCCGGCTCCGTA
LOC_Os05g29040
OsAffx.4467.1.S1_at--296--7711Chr05:16947354..16947378 (25 bp)
GGTGGCCGGGAGTGGCGTCGCCTTC
LOC_Os05g29040
OsAffx.4467.1.S1_at--850--4651Chr05:16947433..16947457 (25 bp)
GCGTGGATCCAACGGCGACCGCCTT
LOC_Os05g29040
OsAffx.4467.1.S1_at--450--451Chr05:16947482..16947506 (25 bp)
ATCTAAAGGTGGTGAGGCATGGTAC
LOC_Os05g29040
OsAffx.4467.1.S1_at--996--8611Chr05:16947491..16947515 (25 bp)
TGGTGAGGCATGGTACCCGTCGCCC
LOC_Os05g29040
OsAffx.4467.1.S1_at--682--3451Chr05:16947499..16947523 (25 bp)
CATGGTACCCGTCGCCCACGTGGAT
LOC_Os05g29040
Target Sequence 
GTTATGATGTTTTCGCTGGTGGGCCATGTAGGCAACGTGACTTCGGGTGGCGGGCGGCTTGGGAGCACGCGTGACAGCCG
GCTCCGTATCACTCCCATCACCGTCACGACGGCTGGATCCACCACCTCGTTCGCCGCGTGTGCGCGCGATGGCCGGATCC
GCGCCACCGATGCTGCCGACGACGATGGGGAAGAGGAGGTGGCCGGGAGTGGCGTCGCCTTCCCCACGCGCGGCGACGAC
GGATCTGGCGGTGGTGAGGCATGGCGGCCATCGCCCGCGTGGATCCAACGGCGACCGCCTTCCCCCCACATGGCGGCGGC
GGTGGATCTAAAGGTGGTGAGGCATGGTACCCGTCGCCCACGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis