Browse Element(s) Details


OsAffx.4552.1.S1_at

Description tigr:9633.m03523
TID=OsAffx.4552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3805011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37980OsAffx.15003.1.S1_at11/115+22196702..22200893Partner of SLD five, PSF1 family protein
LOC_Os05g37990OsAffx.27216.1.S1_at10/115+22207223..22208039hypothetical protein
LOC_Os05g37990OsAffx.27216.1.S1_x_at10/115+22207223..22208039hypothetical protein
LOC_Os05g38000Os.49671.1.S1_at11/115+22210337..22214021expressed protein
LOC_Os05g38010NANA5+22214691..22215174Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os05g38020Os.55361.1.S1_x_at11/115+22216395..22216893expressed protein
LOC_Os05g38030OsAffx.15004.1.S1_at11/115+22219157..22219435hypothetical protein
LOC_Os05g38040Os.11961.1.S1_at11/115+22220208..22223175expressed protein
LOC_Os05g38050OsAffx.4552.1.S1_at11/115+22224749..22225217hypothetical protein
LOC_Os05g38060OsAffx.19542.3.S1_x_at4/115+22229452..22233016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g38070OsAffx.28048.3.S1_at11/115+22234379..22235035hypothetical protein
LOC_Os05g38070OsAffx.28048.2.S1_x_at1/115+22234379..22235035hypothetical protein
LOC_Os05g38080OsAffx.15005.1.S1_at9/115+22248438..22249311hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4552.1.S1_at--454--8271Chr05:22224779..22224803 (25 bp)
GGCATGTTCGACCTACCAGACTTGA
LOC_Os05g38050
OsAffx.4552.1.S1_at--953--6691Chr05:22224784..22224808 (25 bp)
GTTCGACCTACCAGACTTGAGAATC
LOC_Os05g38050
OsAffx.4552.1.S1_at--957--6451Chr05:22224809..22224833 (25 bp)
GATCAATTACGATTCACTAACTACG
LOC_Os05g38050
OsAffx.4552.1.S1_at--25--6571Chr05:22224819..22224843 (25 bp)
GATTCACTAACTACGAGGTTGCATT
LOC_Os05g38050
OsAffx.4552.1.S1_at--767--9791Chr05:22224826..22224850 (25 bp)
TAACTACGAGGTTGCATTGCACGCA
LOC_Os05g38050
OsAffx.4552.1.S1_at--999--6151Chr05:22224833..22224857 (25 bp)
GAGGTTGCATTGCACGCAATCATGA
LOC_Os05g38050
OsAffx.4552.1.S1_at--323--10731Chr05:22224842..22224866 (25 bp)
TTGCACGCAATCATGAAGTGGCCAA
LOC_Os05g38050
OsAffx.4552.1.S1_at--137--671Chr05:22224854..22224878 (25 bp)
ATGAAGTGGCCAATGACCTCCCTCA
LOC_Os05g38050
OsAffx.4552.1.S1_at--1026--2091Chr05:22224885..22224909 (25 bp)
ACATCGAGGCGAAGGCAGCCACACA
LOC_Os05g38050
OsAffx.4552.1.S1_at--111--2931Chr05:22224896..22225176 (25 bp)
AAGGCAGCCACACAACGATCAAACG
LOC_Os05g38050
OsAffx.4552.1.S1_at--343--4391Chr05:22224902..22225182 (25 bp)
GCCACACAACGATCAAACGGTATAA
LOC_Os05g38050
Target Sequence 
GGCATGTTCGACCTACCAGACTTGAGAATCGATCAATTACGATTCACTAACTACGAGGTTGCATTGCACGCAATCATGAA
GTGGCCAATGACCTCCCTCACCTCCTACATCGAGGCGAAGGCAGCCACACAACGATCAAACGGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis