Browse Element(s) Details


OsAffx.4581.1.S1_at

Description tigr:9633.m03816
TID=OsAffx.4581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4081011/11BRCA1 C Terminus domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein
LOC_Os05g40790Os.13515.1.S1_at11/115+23833218..23840358NOT2/NOT3/NOT5 family protein, expressed
LOC_Os05g40800OsAffx.15050.1.S1_at11/115+23842764..23845047hypothetical protein
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein
LOC_Os05g40820Os.10406.1.S1_at11/115+23856691..2385992860S ribosomal protein L24, putative, expressed
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4581.1.S1_at--732--5871Chr05:23849521..23849545 (25 bp)
GAGCCGATCTTATGAGGTCCTGATG
LOC_Os05g40810
OsAffx.4581.1.S1_at--183--3871Chr05:23849502..23849526 (25 bp)
CTGATGGCTCTACTGTTTGGGAAAT
LOC_Os05g40810
OsAffx.4581.1.S1_at--371--10211Chr05:23849251..23849275 (25 bp)
TATTCCAAGTCCAGAAGCTTCCTTT
LOC_Os05g40810
OsAffx.4581.1.S1_at--905--6531Chr05:23849219..23849243 (25 bp)
GATTTAGCCATGACTCACGTGCATC
LOC_Os05g40810
OsAffx.4581.1.S1_at--704--8971Chr05:23848814..23848838 (25 bp)
TGAACTTTTGCCTCAGTGCCTACAT
LOC_Os05g40810
OsAffx.4581.1.S1_at--204--7291Chr05:23848799..23848823 (25 bp)
GTGCCTACATAAACCCTGACGACAG
LOC_Os05g40810
OsAffx.4581.1.S1_at--219--2151Chr05:23848765..23848789 (25 bp)
ACAGAGCCTGATTGCAGCTGCTGGA
LOC_Os05g40810
OsAffx.4581.1.S1_at--879--4691Chr05:23848718..23848742 (25 bp)
GCGGCTCGCATTTGCTGCGTGAAAA
LOC_Os05g40810
OsAffx.4581.1.S1_at--211--8991Chr05:23848676..23848700 (25 bp)
TGAAGCCATGCTACTTCGTCTACGA
LOC_Os05g40810
OsAffx.4581.1.S1_at--80--7931Chr05:23848623..23848647 (25 bp)
GGATTGCTTGATGATCTCCCTAAGG
LOC_Os05g40810
OsAffx.4581.1.S1_at--465--8071Chr05:23848566..23848590 (25 bp)
GGAGCTCAGGTGATCAGCCATTTGA
LOC_Os05g40810
Target Sequence 
GAGCCGATCTTATGAGGTCCTGATGGCTCTACTGTTTGGGAAATGGGTTGTCACGGTTGGATGGATTATGGATTGCTTGG
TAAAGTTTATTCCAAGTCCAGAAGCTTCCTTTGAGTTAAGATTTAGCCATGACTCACGTGCATCAATTGGTGGAAACAAG
AAAAGAAGAAATCAAGCTTCTGAAGGGGCACAGAAGTTGTTCTCGGGACTGAACTTTTGCCTCAGTGCCTACATAAACCC
TGACGACAGACAACACATACAGAGCCTGATTGCAGCTGCTGGAGGGCAGATACTGGAGACAAACGGCGGCTCGCATTTGC
TGCGTGAAAACCTGGAGAAAGTTGCTGTGAAGCCATGCTACTTCGTCTACGACGGGGGCGCTCCAAGGGATTTCACCCAA
GGATTGCTTGATGATCTCCCTAAGGAGATGGAAGAGGGCAGAGAGTATGCTGCCTGTGGAGCTCAGGTGATCAGCCATTT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis