Browse Element(s) Details


OsAffx.4588.1.S1_at

Description tigr:9633.m03878
TID=OsAffx.4588.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4140011/11Indole-3-acetate beta-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific
LOC_Os05g41360OsAffx.4587.1.S1_at11/115+24143999..24145518expressed protein
LOC_Os05g41370Os.7632.1.S1_at11/115+24147487..24151578Protein kinase domain containing protein, expressed
LOC_Os05g41380OsAffx.27274.1.S1_at8/115+24153958..24154514expressed protein
LOC_Os05g41390Os.24881.1.A1_at7/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41390OsAffx.27284.1.S1_s_at3/115+24157524..24160285G2/mitotic-specific cyclin S13-6, putative, expressed
LOC_Os05g41400OsAffx.4588.1.S1_at11/115+24160946..24162463Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os05g41410OsAffx.19695.1.S1_at10/115+24163567..24165704hypothetical protein
LOC_Os05g41410OsAffx.29554.1.S1_at1/115+24163567..24165704hypothetical protein
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4588.1.S1_at--678--8691Chr05:24161499..24161523 (25 bp)
TGTACGTCTCCCTCGGGAGCTTCCT
LOC_Os05g41400
OsAffx.4588.1.S1_at--1135--5631Chr05:24161428..24161452 (25 bp)
GACAGCAAGGTCACGTTCTTGTGGG
LOC_Os05g41400
OsAffx.4588.1.S1_at--384--1491Chr05:24161425..24161449 (25 bp)
AGCAAGGTCACGTTCTTGTGGGTGC
LOC_Os05g41400
OsAffx.4588.1.S1_at--550--751Chr05:24161353..24161377 (25 bp)
ATGGTGGTGCCGTGGACGGACCAGC
LOC_Os05g41400
OsAffx.4588.1.S1_at--670--1931Chr05:24161338..24161362 (25 bp)
ACGGACCAGCTGAAGGTGCTGTGCC
LOC_Os05g41400
OsAffx.4588.1.S1_at--29--6351Chr05:24161240..24161264 (25 bp)
GATGCTGACGCTCCCCATAGCGTTC
LOC_Os05g41400
OsAffx.4588.1.S1_at--851--8871Chr05:24161085..24161109 (25 bp)
TGATGGTGATGGATTCCGATGCGGC
LOC_Os05g41400
OsAffx.4588.1.S1_at--157--5931Chr05:24161028..24161052 (25 bp)
GAGCTTCGCTGATGCGAGAGGCCTC
LOC_Os05g41400
OsAffx.4588.1.S1_at--1156--6751Chr05:24160993..24161017 (25 bp)
GTTCAAGAGGGTGGTTCTTCCTACA
LOC_Os05g41400
OsAffx.4588.1.S1_at--1099--7711Chr05:24160984..24161008 (25 bp)
GGTGGTTCTTCCTACAGAGACGTGA
LOC_Os05g41400
OsAffx.4588.1.S1_at--266--10551Chr05:24160979..24161003 (25 bp)
TTCTTCCTACAGAGACGTGACGTCT
LOC_Os05g41400
Target Sequence 
TGTACGTCTCCCTCGGGAGCTTCCTCTCGGTGTCACGGCCGCAGCTCGACGAGATCGCCGCCGGCCTCGCCGACAGCAAG
GTCACGTTCTTGTGGGTGCTCCGCGGCGACTCCGGCGCGCGAGACATCCTCCGCGGCGGCGGCGGCATGGTGGTGCCGTG
GACGGACCAGCTGAAGGTGCTGTGCCACCCTTCCGTCGGCGGCTTCTTCACCCACTCCGGCATGAACTCGACGCTGGAGG
CGGTGCACGCCGGCGTGCCGATGCTGACGCTCCCCATAGCGTTCGACCAGCCGATCGTCGCCCGGCTCGTCGCCGACGAG
TGGAGGATCGGGTACGGCCTCAGGGAGAACGGGGACGGCGGCGGCTGCAGCGGCGTCGTCGGGAGGGAGGAGATCGCCGC
GGCGGTGAGGAGGCTGATGGTGATGGATTCCGATGCGGCGGCGGCGGAAGAGGCGAAGGAGATGAGGAGGAGAGCTTCGC
TGATGCGAGAGGCCTCTCGCGCCGCGGTTCAAGAGGGTGGTTCTTCCTACAGAGACGTGACGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis