Browse Element(s) Details


OsAffx.4649.1.S1_at

Description tigr:9633.m04465
TID=OsAffx.4649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to root cap protein 2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4794011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47880Os.5255.1.S1_at11/115+27374195..27375476Galactosyltransferase family protein, expressed
LOC_Os05g47890Os.8991.1.S1_at11/115+27376091..27378590Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os05g47900Os.55141.1.S1_at11/115+27379989..27382026Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47910NANA5+27382768..27383739retrotransposon protein, putative, unclassified
LOC_Os05g47920Os.46785.2.S1_x_at2/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.30226.2.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.442.1.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47930Os.12118.1.A1_a_at11/115+27390831..27395793thiol oxidoreductase, putative, expressed
LOC_Os05g47940OsAffx.4649.1.S1_x_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47940OsAffx.4649.1.S1_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4649.1.S1_at--761--891Chr05:27400050..27400074 (25 bp)
AGGCGATCGCCGTGCAGTTCTCCGG
LOC_Os05g47940
OsAffx.4649.1.S1_at--639--891Chr05:27400103..27400127 (25 bp)
AGGACGGCCGTGTGGGACGACGACT
LOC_Os05g47940
OsAffx.4649.1.S1_at--915--7131Chr05:27400145..27400169 (25 bp)
GTCTTCGACGGCGAGACCGTGCAGC
LOC_Os05g47940
OsAffx.4649.1.S1_at--717--7231Chr05:27400178..27400202 (25 bp)
GTCGCGCACGCCAGGTGGGAGTCGG
LOC_Os05g47940
OsAffx.4649.1.S1_at--114--8631Chr05:27400193..27400217 (25 bp)
TGGGAGTCGGGTTCCGGCCTGTCCG
LOC_Os05g47940
OsAffx.4649.1.S1_at--241--9291Chr05:27400214..27400238 (25 bp)
TCCGTGACGCGGACCAAGGCGGCCA
LOC_Os05g47940
OsAffx.4649.1.S1_at--3--4651Chr05:27400263..27400287 (25 bp)
GCGTGTTCAAGATCACCGCGAACGT
LOC_Os05g47940
OsAffx.4649.1.S1_at--532--8791Chr05:27400266..27400290 (25 bp)
TGTTCAAGATCACCGCGAACGTGGT
LOC_Os05g47940
OsAffx.4649.1.S1_at--132--2811Chr05:27400271..27400295 (25 bp)
AAGATCACCGCGAACGTGGTGCCCA
LOC_Os05g47940
OsAffx.4649.1.S1_at--354--6451Chr05:27400273..27400297 (25 bp)
GATCACCGCGAACGTGGTGCCCATC
LOC_Os05g47940
OsAffx.4649.1.S1_at--378--7951Chr05:27400314..27400338 (25 bp)
GGATCCACAGGTACGGGGTCACCGA
LOC_Os05g47940
Target Sequence 
AGGCGATCGCCGTGCAGTTCTCCGGCGGCCACCGCCTCTACGTCGGCGCGCGCAGGACGGCCGTGTGGGACGACGACTCC
GACCGCCTCGCCGTCGTCTTCGACGGCGAGACCGTGCAGCTGCAGCGCGTCGCGCACGCCAGGTGGGAGTCGGGTTCCGG
CCTGTCCGTGACGCGGACCAAGGCGGCCAACGGCGTCCTCGTCGAGCTCGACGGCGTGTTCAAGATCACCGCGAACGTGG
TGCCCATCACCAAGGAGGACTCGAGGATCCACAGGTACGGGGTCACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis