Browse Element(s) Details


OsAffx.4696.1.S1_at

Description tigr:9634.m00141
TID=OsAffx.4696.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ADP-ribosylation factor family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0239011/11ADP-ribosylation factor 1, putative
LOC_Os09g270301/11Cysteine proteinase 2 precursor, putative, expressed
LOC_Os11g098101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein
LOC_Os06g02380Os.51795.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380Os.12628.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390OsAffx.4696.1.S1_at11/116+818374..819357ADP-ribosylation factor 1, putative
LOC_Os06g02400Os.44826.1.S1_at5/116+824557..828064F-box domain containing protein
LOC_Os06g02410OsAffx.30517.2.A1_at11/116+827718..829762expressed protein
LOC_Os06g02410Os.4509.1.S1_x_at10/116+827718..829762expressed protein
LOC_Os06g02420Os.4510.1.S1_at6/116+831842..833940ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430Os.15602.1.S1_x_at11/116+834630..838033expressed protein
LOC_Os06g02430Os.15602.1.S1_at10/116+834630..838033expressed protein
LOC_Os06g02440Os.4513.1.S1_at11/116+840323..843186expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006508biological_processproteolysis
GO:0005525molecular_functionGTP binding
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4696.1.S1_at--591--1292Chr11:5243742..5243766 (24 bp)
AGATGAAGGTTCTGATGCTTGGGCT
LOC_Os11g09810
OsAffx.4696.1.S1_at--746--4771Chr06:818558..818582 (25 bp)
GCTGCTGGGAAGACGACGATTCTGT
LOC_Os06g02390
OsAffx.4696.1.S1_at--575--5771Chr06:818572..818596 (25 bp)
GACGATTCTGTACAGGCTGCACATT
LOC_Os06g02390
OsAffx.4696.1.S1_at--536--9031Chr06:818589..818613 (25 bp)
TGCACATTGGCGAAGTTCTGTCCTC
LOC_Os06g02390
OsAffx.4696.1.S1_at--301--1591Chr06:818822..818846 (25 bp)
AGCTCCGACCTCTCTGGAGACAATA
LOC_Os06g02390
OsAffx.4696.1.S1_at--397--2231Chr06:818841..818865 (25 bp)
ACAATACTTCAGAAACGCCGACGCC
LOC_Os06g02390
OsAffx.4696.1.S1_at--506--451Chr06:818962..818986 (25 bp)
ATCTACGTGGTTGATTCGATGGACA
LOC_Os06g02390
OsAffx.4696.1.S1_at--977--8012Chr09:16438750..16438953 (25 bp)
GGAGGAGTTCCAGGCCATCATCCGC
LOC_Os09g27030
OsAffx.4696.1.S1_at--1156--9251Chr06:819065..819087 (23 bp)
TCCTCGCCAACAAGCAGGACCTGAA
LOC_Os06g02390
OsAffx.4696.1.S1_at--17--9731Chr06:819230..819254 (25 bp)
TCAAGAACCGGAGGTGGCACTGTCA
LOC_Os06g02390
OsAffx.4696.1.S1_at--436--8251Chr06:819245..819269 (25 bp)
GGCACTGTCAGGGAGCCTCAGCGCT
LOC_Os06g02390
Target Sequence 
AGATGAAGGTTCTGATGCTTGGGCTGGATGCTGCTGGGAAGACGACGATTCTGTACAGGCTGCACATTGGCGAAGTTCTG
TCCTCCATACCCACAATCGGGTTCAACGTGGAGAAGGTGGAGTACAAGAACGTGGCCTTCACGGTGTGGGACGTGGGAGG
CCAGGACAAGCTCCGACCTCTCTGGAGACAATACTTCAGAAACGCCGACGCCCTGATCTACGTGGTTGATTCGATGGACA
GGGAAAGGATAGGAGTAGCCAAGGAGGAGTTCCAGGCCATCATCCGCGACCCCCTCATGCTCAACAGCGTCATCCTCCTC
CTCGCCAACAAGCAGGACCTGAAAGGGGCGATGAGCTCGTCGGAGGTGTGCCAGCGGCTGGGGGCGTACGAGGAGCTCAA
GAACCGGAGGTGGCACTGTCAGGGAGCCTCAGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis