Browse Element(s) Details


OsAffx.4780.1.S1_at

Description tigr:9634.m00891
TID=OsAffx.4780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0938011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g09380OsAffx.4780.1.S1_at11/116+4719601..4720428hypothetical protein
LOC_Os06g09390Os.7177.1.S1_at11/116+4730331..4732912ethylene response element binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4780.1.S1_at--740--7371Chr06:4719990..4720362 (25 bp)
GTGAGGTCCCACACCAGAAAGGCAA
LOC_Os06g09380
OsAffx.4780.1.S1_at--448--1011Chr06:4719987..4720359 (25 bp)
AGGTCCCACACCAGAAAGGCAAAAG
LOC_Os06g09380
OsAffx.4780.1.S1_at--455--2912Chr02:3725836..3725860 (25 bp)
AAGGCAAAAGGCGTAGGCAAGAACG
NONE
OsAffx.4780.1.S1_at--122--4611Chr06:4719875..4719899 (25 bp)
GCGACGGCGAGAGGTTGCGGCTGTT
LOC_Os06g09380
OsAffx.4780.1.S1_at--455--7131Chr06:4719769..4719793 (25 bp)
GTCATCCGCGACTAAGCTGCCGTGT
LOC_Os06g09380
OsAffx.4780.1.S1_at--1080--531Chr06:4719766..4719790 (25 bp)
ATCCGCGACTAAGCTGCCGTGTTCA
LOC_Os06g09380
OsAffx.4780.1.S1_at--903--9171Chr06:4719752..4719776 (25 bp)
TGCCGTGTTCACGTTTCGAAGGTGC
LOC_Os06g09380
OsAffx.4780.1.S1_at--232--9691Chr06:4719744..4719768 (25 bp)
TCACGTTTCGAAGGTGCCTCCGGAA
LOC_Os06g09380
OsAffx.4780.1.S1_at--596--9351Chr06:4719737..4719761 (25 bp)
TCGAAGGTGCCTCCGGAAGTCCAGA
LOC_Os06g09380
OsAffx.4780.1.S1_at--25--7291Chr06:4719731..4719755 (25 bp)
GTGCCTCCGGAAGTCCAGATGACAA
LOC_Os06g09380
OsAffx.4780.1.S1_at--234--1311Chr06:4719715..4719739 (25 bp)
AGATGACAACTTGGATCGCCCTGCC
LOC_Os06g09380
Target Sequence 
GTGAGGTCCCACACCAGAAAGGCAAAAGGCGTAGGCAAGAACGAGGAGAGGATAAAAAGGAAAAGAGACGGGGAAGAGAG
AGAGATCGCGGTGATGGCCGGAGAAGCGGAGGATGGCGACGGCGAGAGGTTGCGGCTGTTCGTCAGCCAGGTGCCCTGCA
GCATGGCGGAGGAGGAGATCCTCGCCGTGGACCGTGCCGCTCTCGTGCCAACGACGCCACCGTCATCCGCGACTAAGCTG
CCGTGTTCACGTTTCGAAGGTGCCTCCGGAAGTCCAGATGACAACTTGGATCGCCCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis