Browse Element(s) Details


OsAffx.4816.1.S1_at

Description tigr:9634.m01247
TID=OsAffx.4816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1265011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12630Os.14330.1.S1_at11/116+6891497..6894583Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os06g12640OsAffx.27586.1.S1_at11/116+6896997..6900337expressed protein
LOC_Os06g12650OsAffx.4816.1.S1_at11/116+6906712..6909524hypothetical protein
LOC_Os06g12660Os.51586.1.S1_at8/116+6914784..6915583expressed protein
LOC_Os06g12660OsAffx.15392.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12660Os.4657.1.S1_at1/116+6914784..6915583expressed protein
LOC_Os06g12669NANA6+6920622..6921359NA
LOC_Os06g12680Os.55422.1.S1_at11/116+6922216..6923998Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g12690Os.9510.1.S1_s_at11/116+6927366..6931491DCN1-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4816.1.S1_at--348--8191Chr06:6906756..6906780 (25 bp)
GGAAGGAGACGGAAATGACTCGCAA
LOC_Os06g12650
OsAffx.4816.1.S1_at--227--5591Chr06:6906767..6906791 (25 bp)
GAAATGACTCGCAAGAAGTCGATGG
LOC_Os06g12650
OsAffx.4816.1.S1_at--284--9391Chr06:6909368..6909392 (25 bp)
TCGATGGTTACCGATAGGGAAGATG
LOC_Os06g12650
OsAffx.4816.1.S1_at--114--831Chr06:6909390..6909414 (25 bp)
ATGGTAGCGGCGGAGCTCAGGCGAC
LOC_Os06g12650
OsAffx.4816.1.S1_at--664--9631Chr06:6909406..6909430 (25 bp)
TCAGGCGACCGCCTGACCTGATCAT
LOC_Os06g12650
OsAffx.4816.1.S1_at--389--3851Chr06:6909418..6909442 (25 bp)
CTGACCTGATCATCGGGACTTCGGG
LOC_Os06g12650
OsAffx.4816.1.S1_at--1037--4271Chr06:6909422..6909446 (25 bp)
CCTGATCATCGGGACTTCGGGAGGT
LOC_Os06g12650
OsAffx.4816.1.S1_at--976--1051Chr06:6909443..6909467 (25 bp)
AGGTGGCTCCGCTACTAATGGGTTA
LOC_Os06g12650
OsAffx.4816.1.S1_at--95--7551Chr06:6909445..6909469 (25 bp)
GTGGCTCCGCTACTAATGGGTTATA
LOC_Os06g12650
OsAffx.4816.1.S1_at--796--4791Chr06:6909448..6909472 (25 bp)
GCTCCGCTACTAATGGGTTATATCA
LOC_Os06g12650
OsAffx.4816.1.S1_at--638--8631Chr06:6909461..6909485 (25 bp)
TGGGTTATATCAACATGTTTTCAGC
LOC_Os06g12650
Target Sequence 
GGAAGGAGACGGAAATGACTCGCAAGAAGTCGATGGGAAGACAGCGACGATGACGATGATGAAGATAGGGGGTCGATGGT
TACCGATAGGGAAGATGGTAGCGGCGGAGCTCAGGCGACCGCCTGACCTGATCATCGGGACTTCGGGAGGTGGCTCCGCT
ACTAATGGGTTATATCAACATGTTTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis