Browse Element(s) Details


OsAffx.484.1.S1_x_at

Description gb:XM_354395.1
DB_XREF= gi:35191004
GEN=OSJNBa0077F02.34
TID=OsAffx.484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g250606/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g25020OsAffx.23381.1.S1_at10/111+14096054..14096774hypothetical protein
LOC_Os01g25030OsAffx.23382.1.S1_at11/111+14099479..14100370dirigent, putative
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25050OsAffx.23383.1.S1_x_at11/111+14110888..14111717hypothetical protein
LOC_Os01g25060OsAffx.484.1.S1_x_at6/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.484.1.S1_at5/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060Os.43636.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.27704.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25070OsAffx.23384.1.S1_at11/111+14132470..14132748hypothetical protein
LOC_Os01g25080NANA1+14135454..14135777hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.484.1.S1_x_at--2--10573Chr10:6693888..6693908 (21 bp)
TTCTTTCCGACCCATACAAGGACAG
NONE
OsAffx.484.1.S1_x_at--90--10293Chr10:6693891..6694221 (25 bp)
TTTCCGACCCATACAAGGACAGCTC
NONE
OsAffx.484.1.S1_x_at--683--1812Chr01:14113017..14113396 (25 bp)
ACCCATACAAGGACAGCTCCGTCGG
NONE
OsAffx.484.1.S1_x_at--882--332Chr01:14113021..14113400 (25 bp)
ATACAAGGACAGCTCCGTCGGGCAC
NONE
OsAffx.484.1.S1_x_at--320--9852Chr01:14113381..14113401 (21 bp)
TACAAGGACAGCTCCGTCGGGCACA
LOC_Os01g25060
OsAffx.484.1.S1_x_at--302--2933Chr06:10855059..10855080 (22 bp)
AAGGACAGCTCCGTCGGGCACAGAA
NONE
OsAffx.484.1.S1_x_at--76--4793Chr06:10855063..10855086 (24 bp)
GCTCCGTCGGGCACAGAACCGATGT
NONE
OsAffx.484.1.S1_x_at--1128--9212Chr01:14113389..14113413 (25 bp)
TCCGTCGGGCACAGAACCGATGTCA
LOC_Os01g25060
OsAffx.484.1.S1_x_at--284--1432Chr01:14113401..14113425 (25 bp)
AGAACCGATGTCACTAACAATCCCC
LOC_Os01g25060
OsAffx.484.1.S1_x_at--463--7092Chr01:14113410..14113433 (24 bp)
GTCACTAACAATCCCCAACACGAAG
LOC_Os01g25060
OsAffx.484.1.S1_x_at--417--531Chr07:13118571..13118595 (25 bp)
ATCCCCAACACGAAGAAGATGTCGG
NONE
Target Sequence 
TTCTTTCCGACCCATACAAGGACAGCTCCGTCGGGCACAGAACCGATGTCACTAACAATCCCCAACACGAAGAAGATGTC
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.484.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis